cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121221     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os10g0536000 ( IRGSP 1.0 )
RAP - Chromosome No. 10
RAP - Location, Length 21,345,204 -  21,348,469  ( - );   3,266(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,345,204 -  21,345,513 ( - );   310 (bp)
Exon 2 Location 21,345,600 -  21,345,713 ( - );   114 (bp)
Exon 3 Location 21,345,789 -  21,345,941 ( - );   153 (bp)
Exon 4 Location 21,348,114 -  21,348,197 ( - );   84 (bp)
Exon 5 Location 21,348,291 -  21,348,469 ( - );   179 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os10g0536000 Os10t0536000-01 215940 J023090H15 15698 LOC_Os10g39120.1 AK121221 14374 AP008216.2 255679158 BAF27081.1 113639776 NC_008403.2 297611005 NM_001071702.1 115483147 NP_001065167.1 115483148
Os10g0536000 Os10t0536000-01 215940 J023090H15 15698 LOC_Os10g39120.2 AK121221 14374 AP008216.2 255679158 BAF27081.1 113639776 NC_008403.2 297611005 NM_001071702.1 115483147 NP_001065167.1 115483148


Chromosome: 10 ,  position: 21,345,204 - 21,348,469 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggaaataata atacaagaga ccgaacgact agagattaga gaaggcggtg cttcttcttc 
000061 ttttccagag actaccaagc ccaaaccagc aaccacccgc cgccgccgcc atgtcgggag 
000121 ggatcgcacg cggccgcctc gcggaggagc gcaaggcctg gcggaagaac caccctcacg 
000181 tcggtgattt tttttctatt tttttcgcat cttctatggc cgccgattgt gtttcttctg 
000241 acctggtgct ttgcttgctt gctctggatc aggggttcgt ggcgaagccg gagacgatgg 
000301 ccgacgggtc ggcgaacctc atgatctggc actgcaccat ccccggcaag cagggggtaa 
000361 gtaaccaaac tgctctagcc gaggcgccga cggcgaacca tcccacccct cttcctgttt 
000421 cgatctgttt cgattatgct gctgcggatg ctggtgtgtg ctcggattgt gatgcgacca 
000481 cgcaatcgga tgcttcctct gtgtggggga gaatttaggt ttttgccgcg ctgttctgtt 
000541 ggtaggtttg ggaggggggg gggggtagat ttgtagattg gattggtatc tgcactggaa 
000601 tctctataac ctgtgggaga attatgagta gttatgttgg ttggagggtt tgaatgaagt 
000661 ttttattgat ggatcgtgtt gatttgcagt ggggatttgc tagggtctta cagatcttag 
000721 tatgattttt ttttttagaa ttttagtgtt atcatcaatt gatctagtag taccttttat 
000781 ttctggacag ctgggaggag ttttctctgt tgtttgagtg ttaattacgt gattttgtag 
000841 catgagttgc cttcaaacgt tctaggttca gcgtatcaaa tagttctttt ccatcactag 
000901 aggtttgcac agttgcctgc gtgctttgct ttaccacctg taaaccaggc atggagcaca 
000961 cggactcatg aatcccgatg caattgcacg gagtcacggg cacagttatt gaattaacag 
001021 ggtacaagga tctgaatgtt gtaagattta gttgctgaaa gatggattat agtcaccatc 
001081 actactgtct tcataatcaa catcacttcc aaaacacttt atcttgcata tggggggata 
001141 tatagtaatc ttcagtggcg gacccaggat ttcttcatgc cctaggccaa atctaattgc 
001201 tactatccca taccataaat gagacccaca ctaatacata ataagaagta caatacaaat 
001261 tattatagtt tcgaaaggaa aaaaacaaca acgcaagaaa cagcatctaa cctcaaaatg 
001321 acagctattt gctctttgaa agatgcatct ccatcatact catcaacaaa aatggcggat 
001381 tttttttcca ccgaaagcat ttagaatggt tttacccgtc tcaattgcac aagatttaca 
001441 ctgtagattt tgtattttta gtgaagtgaa tagatgattc ccgggagaat tttgaaatgt 
001501 ttctggtcat tagatgattc ccgggagaat tttgaaatgt ttctggtcat ctttattctt 
001561 ctctttatac cccatcaatc atctatagat ttcatcgcta agcctcttca ccttctatct 
001621 ctattaagtt taaaacaaat tgaatggaat cagaagatct ataggtgatc taggccattt 
001681 aggcatttga gaaatgggaa taccagaaat agattatgaa aaactcacct gtcaaggtcc 
001741 tcgtccgctc cttgcccgac agagtggagg tctgagactc tgagcacctg ccgcttgccg 
001801 caggcgcacc gtgcaggggg gttgtgcaga aagagccttg ttgccgggcc gccgagccag 
001861 cgagaggagc tgaggaggca gtggacatgg acggagggag ggaagtgagg tggctgggca 
001921 gggtggtggg tggctggaag cggggagact cacgtatggt ggcggctggc cttggaggga 
001981 gcgagcaggg agggaggcga ggggacggac gcatcggcgt cggcgcatct cccacgagcg 
002041 catagcgttg tagtggtagc agggggaagt tagggttaga caataaatag tattgggcaa 
002101 tagatgctag cctgacgggc ctcgggccaa acctttgtga gccaaaattt ctaagctgta 
002161 accaatgggg ggatccattg ctagttgggc caggccccag gttgtggcct aaggtgcccg 
002221 ggcctgggtg cgcccctggt gatcttgtgt attagttcag catgctgctg ctcaacttct 
002281 attgttatgt aacaatcact ctcttgacaa accagcctag taggctaaca aatactaatt 
002341 ttccttcaat aaatgtatta ttgtcatata cttattgctt ctttatgttg atatatgtat 
002401 attacagtgt atttttcact ctgcccatgg aacgccaatt aggggttgct tttaagcttt 
002461 tcctgtttct ttccatccag agttcataat tgcttatgtt atttgtgtgt attgctacat 
002521 ttgtacagac cgattgggaa ggtgggtact accctcttac ccttcacttc agtgaggact 
002581 atcctagcaa accacccaag tgcaagttcc cacagggctt tttccaccca aatgtctatc 
002641 cttcaggaac agtgtgcctc tcaattctta atgaggatag tgtaagtctt caagctgttt 
002701 cttcagtctt atttatttcc agtctaccga atttatttac agttgcatct tctcagggct 
002761 ggagacctgc tatcactgta aagcagatcc ttgttggaat acaggacttg cttgatcagc 
002821 caaatcctgc tgatcctgca cagactgacg gttatcacat ttttatacag gtcggaatga 
002881 aaaaaaaatg agattctggc attccttgtt cttacattac atgtcattca ttgacattat 
002941 tttgtctact ttgcaggaca aaccagaata taagaggcgt gttcgtgttc aggccaagca 
003001 gtaccctgct ttgctttgag gacattggcc taataaagtt actacccgat tcatcatgca 
003061 catccgcata gtagtttgca aaatctcaga ttattgcacc agaaaatatc ggattttatg 
003121 ggatataacc taaaatggaa tgtttgaaga actgtccaat atcattgtgg actttttgtg 
003181 ctgtcattac catttgtgct gtgtgaagaa cagaaatagc tttgtcaact gttgaaaccg 
003241 cttgagtgat ggatgctaat ttggat

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV915409 bags14e19 629
more... (Total Hit Count: 18 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ209997 wh16l14 598
more... (Total Hit Count: 188 )
/rice/oryzabase