cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK110534     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os10g0578200 ( IRGSP 1.0 )
RAP - Chromosome No. 10
RAP - Location, Length 23,562,206 -  23,563,436  ( + ) ;   1,231(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 23,562,206 -  23,562,273 ( + ) ;   68 (bp)
Exon 2 Location 23,562,361 -  23,563,436 ( + ) ;   1,076 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os10g0578200 Os10t0578200-01 002168A07 113388 002168A07 19633 LOC_Os10g42750.1 AK110534 24231 AP008216.2 255679158 BAF27335.1 113640030 NC_008403.2 297611005 NM_001072030.1 115483655 NP_001065498.1 115483656 Q8W3F9 CSLD1_ORYSJ


Chromosome: 10 ,  position: 23,562,206 - 23,563,436 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gggccactgg ctccgtcgag atcttcttct cacgcaacaa cgcactcttc gcttcctcaa 
000061 agatgaaggt acctagcttg ctattcgatc gattattttt cttcttcttc ttcttccgct 
000121 gccgccaaac aaacaattat ccattgcatt tgcaggttct ccagcgcatc gcttacctca 
000181 acgttggcat ctaccccttc acctccgtct tcctcatcgt ctactgcttc ctcccggcgc 
000241 tctccctctt ctcggggcag ttcatcgtgc agacgctcaa cgtcaccttc ctcacctacc 
000301 tgctcatcat caccatcacg ctctgcctcc tggccatgct ggagatcaag tggtccggca 
000361 tcgcgctgga ggagtggtgg cggaacgagc agttctggct catcggcgga accagcgccc 
000421 acctcgccgc cgtcctgcag ggccttctca aggtcatcgc cggcatcgag atctccttca 
000481 ccctcacctc caagcagctc ggcgacgacg tcgacgacga gttcgccgag ctctacgcgg 
000541 tcaagtggac gtccctcatg ataccgccgc tcaccatcat aatgatcaac ctcgtcgcca 
000601 tcgccgtcgg cttcagccgc accatctaca gcaccatccc gcagtggagc aagcttctcg 
000661 gtggagtctt cttcagcttc tgggtcctcg cgcatctcta ccccttcgcc aagggcctca 
000721 tgggcaggag gggaaggaca cccaccatcg tctacgtctg gtctggcctc gtcgccatca 
000781 ccatctcctt gctctggatt gcaatcaagc ctccttctgc acaagccaac tcacagctag 
000841 gaggatcctt ctctttcccc tgatatacat atattctcat tccacacacc caatccagac 
000901 tacctgtctc tctgctatct gcttgcttag gattcattca tatgctagct ggtcgatcga 
000961 gctaccgcag cctagggaac atgatcatat cacccacagt ctgtttgctt catggagcaa 
001021 actgcacttc accccagtcc agatctgctt cttcacagtg agtgagatca ctatttttgc 
001081 ttgtttgtga tttttttttc taaaattgtt tagagctcat tgtcatttga atggcattcc 
001141 tagaaaaggg agaaagaaaa gacacttgac atcaacacag gtgtaataca ttgttactag 
001201 agaatcggca atataatgtt actagagtat c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ485887 rbah59a20 648
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ601721 rwhv16n9a17 810
more... (Total Hit Count: 24 )
/rice/oryzabase