cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK108346     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os10g0579400 ( IRGSP 1.0 )
RAP - Chromosome No. 10
RAP - Location, Length 23,604,660 -  23,605,763  ( + ) ;   1,104(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 23,604,660 -  23,604,787 ( + ) ;   128 (bp)
Exon 2 Location 23,605,099 -  23,605,763 ( + ) ;   665 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os10g0579400 Os10t0579400-01 002142B07 111199 002142B07 17817 LOC_Os10g42850.1 AK108346 2529 AP008216.2 255679158 BAF27344.1 113640039 NC_008403.2 297611005 NM_001072039.1 115483673 NP_001065507.1 115483674


Chromosome: 10 ,  position: 23,604,660 - 23,605,763 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gttttggcag tcgtcggccg accaagggga cctctcggat gtggtgaggg ccagccttca 
000061 gctgcagacg gcgcctcgcc atcaggctgc atcgccgccg tatgtgcacc tcttaggagg 
000121 aggaggagga ggaggagaag accagcttgc agcagtgagc caacacgctg agcagcagca 
000181 gcagagcatg gtggatgctt ctgcagcttg cgaccttctc catgcgctgt tgccaccacc 
000241 accagtagtg caggtgcagc agcagggagc gtcgaggacg aggacgacga ttgaggagga 
000301 caccaccggc gacggcgagg agttatttgc tggtgctcat tatgtcgttc cgcccatcaa 
000361 gcgaaggtac gtaggtattc tttaacttct tatactggag tagtacctag ctagctgtaa 
000421 ggatgtatat atatatatac aggaagagcc agacgaagaa ggtggtgtgc atcccggcgg 
000481 gggcgagtgg cggcggcggc ggcgaggtgg tgccgtcgga cctgtgggcg tggaggaagt 
000541 acgggcagaa gcccatcaag gggtcgccct accctcgcgg gtactaccgc tgcagcagct 
000601 ccaaaggttg ctccgcccgg aagcaggtgg agcgcagccg cgccgacccc acaatgctcg 
000661 tcgtcaccta cacctccgac cacaaccatc catggccaac ccaccgcaac gccctcgccg 
000721 gctccacccg cccctcctcc tccaactcat ccaacatacg cctccaagac agtactccag 
000781 ttcatcatca gagtcagact ggccacgatc gtcttacgac cactcacctc aagcaggagg 
000841 acgtgatcat ctccccctcc ctgctgcagc ccgaccacca tcagctgtgt accattattg 
000901 acaccaagca ccacctcttg tttcatcaag actatcctca cagcttcggc ttgttcgact 
000961 agccacactt tcttgtaagc tactagtagc tagctagcta ctttaccatc tatatatagc 
001021 ctaatgtaag ctagcgtacg tgcttaatta cttgttacag agcacgccac aattgttagt 
001081 taaaatgtta ctccctcccg tcac

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ692027 whrd7m01 702 view details
/rice/oryzabase