cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK105510     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os10g0484800 ( IRGSP 1.0 )
RAP - Chromosome No. 10
RAP - Location, Length 18,813,487 -  18,815,763  ( + ) ;   2,277(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 18,813,487 -  18,813,755 ( + ) ;   269 (bp)
Exon 2 Location 18,814,578 -  18,815,763 ( + ) ;   1,186 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os10g0484800 Os10t0484800-01 001127E05 108359 001127E05 15868 LOC_Os10g34360.1 AK105510 5053 AK105510.1 32990719 BAG97274.1 215740618 NC_008403.2 297611005 NM_001071426.1 115482595 NP_001064891.1 115482596


Chromosome: 10 ,  position: 18,813,487 - 18,815,763 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actgtcacac agcgaaatca caggactaga atacttgctg actactgagg cgaaaggata 
000061 ccgggtggcg aagatggctg accttggatt cggcgatgcc aggagtggca atggcagcag 
000121 gagccaatgc tccaggggga aggcgatgct gctcgccctc ggcaagggcc tccctgagca 
000181 agttcttccc caggagaagg tcgtcgagac ctacctccag gacaccatct gcgacgatcc 
000241 tgcaacaagg gcaaagctgg aaagactttg tgagttttgt tcatgtcact tggtatttta 
000301 catcctgctt tctaggtttg agaattttca gaagccaaca tagttggctt agctctcctg 
000361 aaaaatataa ctggaccctg agttatcaaa agattgttgt ttgttggctt ggctgcatca 
000421 ctgtgtgtag aatctagctt tatttttatg catctgagac tattaatcat cataggttga 
000481 taatggaact agtagaatga gaaagataaa tagatcatcg tttagtgaaa atgggcacat 
000541 gatcatcagt actactaaat tttagtagca cttctgctta acaaaaatca gtagggtgtg 
000601 gaaaatgaaa ttattacagt gaaaaaggca acagattgta attagtaaac aacatgtgca 
000661 catgataagt actccctaac ttacaggagc acttggctct aggaaaatca ctacaatgct 
000721 gcttggcaag tctttggatt atagtccaaa tatgatattg aattttagat attcattgta 
000781 tgggttttct tcatcacttt tattggtcag ctttcttttc atgattgcta aggggacatg 
000841 taaaaattca acctagaatt attcttaatc aaagttcaaa atcattttgg attatagtct 
000901 gcagtacaaa taagcacaac acaaatttag ttgccatttt tctggcttgg ccaagggctg 
000961 acaaaataag agttatagga gataatcaca atatatatac cttgaatttg ttctgtcatg 
001021 acttgcacag tccctccaat gcacaaaatt gtgggtactt attttcctac aatttgattt 
001081 tttttttaca ggcaagacca ccacagtgag gacaaggtac actgtcatgt caaaggagct 
001141 cctagacgag cacccagagc tcaggactga gggaactcca acactgacgc cacggcttga 
001201 catctgcaat gctgcagtgc ttgagcttgg tgctactgca gcccgtgccg cccttggtga 
001261 atgggggcgt ccagcagctg acatcaccca ccttgtctac atctcgtcca gtgagcttcg 
001321 cctcccaggg ggtgaccttt tcctggcaac tcgccttggc ctccatccaa acaccgtccg 
001381 cacttccctt ctcttccttg gctgctccgg tggcgctgcc gcgctccgca ccgccaagga 
001441 cattgctgag aacaacccag ggagccgcgt ccttgtagta gccgcggaga cgacggtgct 
001501 gggattccgg ccaccaagtc ctgaccgtcc ttacgatctt gttggtgctg ccctgtttgg 
001561 tgacggcgca tcagctgcga tcattggagc aggccccatt gctgctgagg agagtccctt 
001621 cctagagctt cagttctcaa cacaggagtt cctaccaggg acggacaagg taattgatgg 
001681 caagatcact gaggaaggga ttaatttcaa actggggcgt gatttgcccg aaaagattga 
001741 aaaccgtata gaagggttct gcaggacact catggatcgg gttgggataa aggagttcaa 
001801 tgatgtattc tgggctgtgc atcctggtgg tccagcaata ctgaacaggc tagaggtttg 
001861 ccttgaactc cagccagaga agctcaagat cagtagaaag gccctgatga actatggtaa 
001921 tgtgagcagc aacaccgtct tctatgtgtt ggagtatttg agggatgagt tgaagaaagg 
001981 gatgataagg gaagaatggg gactgatctt ggcttttggc ccaggcatca catttgaagg 
002041 aatgctagtt cgaggcatta actgagactg aaaggggtcc aagaagactt tcagctagat 
002101 ggaagaatca caaacatacc atttccaggt taagtatata gtatgaactt gaaacatctc 
002161 ataaggagca tagatgtctt gacagcatct gtgcactaca tagttattgt tttactgtaa 
002221 tctatgtttt atgtatcaaa caatgtgagg tactctagtt tgaatgcaag atacttg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK251252 FLbaf109k10 1514 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ579541 rwhpc4b23 871
more... (Total Hit Count: 71 )
/rice/oryzabase