cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK102196     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os10g0529400 ( IRGSP 1.0 )
RAP - Chromosome No. 10
RAP - Location, Length 21,089,715 -  21,090,751  ( + ) ;   1,037(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,089,715 -  21,090,123 ( + ) ;   409 (bp)
Exon 2 Location 21,090,206 -  21,090,751 ( + ) ;   546 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os10g0529400 Os10t0529400-01 213043 J033087D04 14711 LOC_Os10g38590.1 AK102196 35988 AP008216.2 255679158 BAF27041.1 113639736 NC_008403.2 297611005 NM_001071662.1 115483067 NP_001065127.1 115483068
Os10g0529400 Os10t0529400-01 213043 J033087D04 14711 LOC_Os10g38590.2 AK102196 35988 AP008216.2 255679158 BAF27041.1 113639736 NC_008403.2 297611005 NM_001071662.1 115483067 NP_001065127.1 115483068


Chromosome: 10 ,  position: 21,089,715 - 21,090,751 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gaacaccaag agaacccact aacgcaacac acatacacac aaacatcgac acatcgtgtc 
000061 catcggaggc acaggagaga tggccggcgc cggacgcgac gagctgaagc tgctcggcat 
000121 gtgggccagc ccgtatgtca gcagagccaa gctcgcgctc caactcaagg gcgtgagcta 
000181 cgagtacatc gaggaggatc tcggcaacaa gagcgacctc ttcctccgct ccaacccggt 
000241 gcacaagacg gtgccggtgc tcatccacaa cggcaacccc atctgcgagt cgagcatcat 
000301 cgtgcagtac atcgacgagt ccttcccctc ctccgccgcc tccctcctcc ccgccgaccc 
000361 ctacgaccgc gccgtcgctc gcttctgggc cgcctacatc gacgacaagg tacgcgcgcg 
000421 tgtaaattgc aacttaactc tcgtgtattt tcaccggtgc gacgccgctc accggcgtgt 
000481 ggactgtgca gctagcggcg ccgtggagaa tggtgtacag ggtgaagacg gaggaggaga 
000541 gggacgagct catgaagcag acgctcgcgg cggtggacgt gctggaggga ggactgaagg 
000601 agtgctccaa ggggaaggga tgcttcttcg gcggcgacag cgtcggctac gtcgacgtcg 
000661 tgctgggtgg cctcgtgtcg tgggtgcacg ccagcgacaa gctctccggc gccaagctct 
000721 tcgacgccgc caaggcgccg ctgctggcgg cgtggctggg gcgcttcggc gagctggatg 
000781 ccgccaaggc cgtcctgcag gacgtcgaca aggtggtcga gtacgccaag aagttccagc 
000841 caagggattc cggcacggct gcagatcgac aagcagtaaa ctaggccggc attgcgacgt 
000901 ccaagagaag tactgagatc tgctgcagat tattgaatta ttcaatgcca cttttgttga 
000961 ctatgttagc tgattcctat caagaacctg atccacgttc tctcaaaagt aaaagatgcg 
001021 gagtgttgtg cctgccc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248990 FLbaf20n10 1091
more... (Total Hit Count: 30 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ687457 whrd10e15 673
more... (Total Hit Count: 193 )
/rice/oryzabase