cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK067249     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os10g0465700 ( IRGSP 1.0 )
RAP - Chromosome No. 10
RAP - Location, Length 17,677,920 -  17,680,350  ( + ) ;   2,431(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 17,677,920 -  17,678,669 ( + ) ;   750 (bp)
Exon 2 Location 17,678,752 -  17,678,962 ( + ) ;   211 (bp)
Exon 3 Location 17,679,051 -  17,679,161 ( + ) ;   111 (bp)
Exon 4 Location 17,679,256 -  17,680,350 ( + ) ;   1,095 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os10g0465700 Os10t0465700-01 J013098M02 202754 J013098M02 2564 LOC_Os10g32810.1 AK067249 1591 AP008216.2 255679158 BAF26712.1 113639407 NC_008403.2 297611005 NM_001071333.1 115482409 NP_001064798.1 115482410


Chromosome: 10 ,  position: 17,677,920 - 17,680,350 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctcatcgacc tccaccccac attgaataat tatttttaat aattttagtt tttttttttt 
000061 ggctttagat atattcccaa tccccaacct cccaataatc cgatctctcc cagttctgtt 
000121 cggatcaagg ctgtgtcgat cgcaaaaaag aaaaaaaaaa caatttcctt ttggggtggt 
000181 tcatctgttg atcacttctt tgtttcccgc gttttgttgg ggattcgatt ttcgggttaa 
000241 gattttctac acgatggcct tgaacttggc tcagagcgcc gcggcggcag cgtgcttcgc 
000301 gaccgccggt gatgcgcggc gagctgcttc ggtggtcgcc atgccgtcgt cgtcgtcgtc 
000361 ggccacgacg agcctgagga tgaagaggca ggcggcgtgc gagccggtgg cgtgccgggc 
000421 ggtggccagg cacgtggcgg cggcggcggc gagcagcagg aggaacggcg tgccggtgtt 
000481 cgtgatgatg ccgctggaca cggtgagcaa gtgcgggagc gcgctgaacc ggaggaaggc 
000541 ggtggcggcg agcctggcgg cgctgaagag cgccggcgtg gaggggatca tggtggacgt 
000601 gtggtggggc atcgtggaga gcgagggccc cggccggtac aacttcgacg gctacgtgga 
000661 gctcatggag atggcccgca agaccggcct caaggtccag gccgtcatgt ccttccacca 
000721 gtgcggcggc aacgtcggcg actccgtcaa gtacgcatct ctcgtctcct tcctcgatca 
000781 tctatctcat ccttctcctc taacctcttc ttgttgttgg tgtggcgtgc agcatcccgc 
000841 tcccgaggtg ggtggtggag gagatggaga aggacaacga cctcgcctac accgaccaat 
000901 ggggacgccg caacttcgag tacatctccc tcggctgcga cgccatgccc gtcttcaagg 
000961 gccgcacgcc cgtcgagtgc tacaccgact tcatgcgcgc cttccgcgac cacttcgcct 
001021 ccttcctcgg cgacaccatc gtcgtaagta ggaggaagga ctcttttgat atcgttgccg 
001081 tttcgccggc ggcgacgacg acgctgatca tccgtgcgtc tccttgtgca ggaaatccaa 
001141 gtcggcatgg gccccgccgg cgagcttcgg tacccgtcct acccggagag caacggcacc 
001201 tggaggttcc ccggcatcgg cgccttccaa tgcaacgaca gggtaactaa tctccgacga 
001261 gcaaaaactc catttgggtc gtcatggatt cgagaaaaac tcttatctgg ataaattttg 
001321 acgtcctgtg gtgcagtaca tgcgtagcag cctgaaggcg gcggcggagg cgaggggcaa 
001381 gccggagtgg ggccacggcg ggccgacgga cgccggcggc tacaacaact ggccggaaga 
001441 cacggtgttc ttccgcggcg actgcggcgg gtggagcacc gagtacggcg agttcttcct 
001501 gtcgtggtat tcgcagatgc tgctggagca cggcgagcgc gtgctgtcgg gcgcgacgtc 
001561 cgtgttcggc gacggcgccg gcgccaagat ctcggtcaag gtggccggca tccactggca 
001621 ctacggcacg cggtcgcacg cgccggagct cacggcgggg tactacaaca cgcggcaccg 
001681 cgacggctac ctcccgatcg cgcgcatgct ggcgcgccac ggcgccgtgc tcaacttcac 
001741 ctgcgtggag atgcgcgacc acgagcagcc gcaggaggcg cagtgcatgc ccgaggcgct 
001801 cgtcaggcag gtggccgccg cggcgcgcgc ggcgggcgtc gggctcgccg gggagaacgc 
001861 gctgccgcgg tacgacggca cggcgcacga ccaggtggtc gccgccgccg ccgaccgcgc 
001921 ggcggaggac cggatggtcg ccttcaccta cctccggatg gggcccgacc tcttccaccc 
001981 ggacaactgg cgccggttcg tcgccttcgt ccgccgcatg tccgagtctg gctcgccgcg 
002041 ggaggccgcc gagagcgccg cgcacggcgt cgcgcaggcc accggctcgc tcgtgcacga 
002101 ggccgcggtc gcgctccgga gctagcacgg tcagacgctc atatacaccg tcgcctcgag 
002161 gtcggattcc gatgtgggat cattcgatct cccttttttt tttcttcttt ttgccatttt 
002221 gtacagcctt ttggggagct ttggatttgt gctttttgtc tcgggaggaa aaccgctctg 
002281 gaggtcgaag agagcgtcat tttcctcccg ttgaagatca cgaatcattt acgttagaga 
002341 tgatgtaatt aagcagggag gggaggggaa cacacacaca ctggcactca aaagttgttg 
002401 tcacgcttgg ggaatatatc catttccagc c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY849767 bast12f07 307
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ716382 whvd12a23 794
more... (Total Hit Count: 10 )
/rice/oryzabase