cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK063367     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os10g0567100 ( IRGSP 1.0 )
RAP - Chromosome No. 10
RAP - Location, Length 22,970,718 -  22,974,351  ( - );   3,634(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,970,718 -  22,971,205 ( - );   488 (bp)
Exon 2 Location 22,971,356 -  22,971,651 ( - );   296 (bp)
Exon 3 Location 22,971,739 -  22,971,851 ( - );   113 (bp)
Exon 4 Location 22,971,966 -  22,972,150 ( - );   185 (bp)
Exon 5 Location 22,972,564 -  22,972,711 ( - );   148 (bp)
Exon 6 Location 22,972,795 -  22,973,073 ( - );   279 (bp)
Exon 7 Location 22,973,149 -  22,973,253 ( - );   105 (bp)
Exon 8 Location 22,973,616 -  22,973,861 ( - );   246 (bp)
Exon 9 Location 22,974,263 -  22,974,351 ( - );   89 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os10g0567100 Os10t0567100-01 001114D11 106356 001114D11 418 LOC_Os10g41760.1 AK063367 21809 AP008216.2 255679158 BAF27267.1 113639962 NC_008403.2 297611005 NM_001071962.1 115483519 NP_001065430.1 115483520


Chromosome: 10 ,  position: 22,970,718 - 22,974,351 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 actgctactg ctccatggaa accactgtgt ctttgctgcc gcacctgctc gtcaagcctt 
000061 cctcctcctt cagctgttgc ttcacaatgg tgatctcttt ttgtttcttt tttggattct 
000121 tcggctatct ttgaatcagt ttatggttct ttggccatgg gagaaacttc tcattccttt 
000181 cttgcttgga gtttcagttg ttgttctttt tctttgcagt tcatctctat ttctgcacat 
000241 gtgcacatca atctaatatc agtatgttgt ttactaagct atttcctccg tttcacaatg 
000301 taaatcattc tagcatttcc cacattcata ttgatgttaa tgaatctaga cttgtgaaat 
000361 atgaatgtgg gaaatgctag aattgtgaaa cggagggagt accagataat ccctacagta 
000421 atgcagctgt ctgcactgca ataaaacaaa tttcgtttga tgaggttacc tcctatgtga 
000481 aaccatgcag ggcattggtc gtcgatatgg aagaatcaag gtgtatgcag tgctcggtga 
000541 tgatgaagct caacatgcca agaacaacat gaggggggcc ttgttccatg tcgataaccc 
000601 cgggccaatg gctcccattg caaaaggcaa cttcttggat gttaaccagg cccttgaggt 
000661 ggtccgattc ggcatccagt actgcgattg gagggcgcgg caggacctcc tcaccatcat 
000721 ggttctgcac aacaaggtat gaaatagtat atatgaaata ttggccatgc agaaagtttc 
000781 agatgaaagg tctcagggcc tgttcacttt gatgccaaaa aaaaccttac caaattttgt 
000841 cattaccaaa attttggcag gatttcctat atagttacca aaatttggca acaaactaaa 
000901 tgtagccact tttctggcaa ctttaccaaa atttggtaag gttgaaaatg tcatcaaagt 
000961 gaacaggccc tcaatttgca taccctggat tttactggtc atgaatttca gtttttgact 
001021 gaatgctgaa tagtgctcga ggttgaagtt gtggacgact gacacagatt cttccacgaa 
001081 ttgttaacat taatgcaggt ggtagaggtt ctcaaatctt tagcaataga gttcaagtca 
001141 aatggaacct tgaggaaaga gcttgcagag ttgcaggaag aattggccaa agctcacaat 
001201 caggtattgc acttgcagga gtcaaatgat aacccttcaa tctcatctgg attctgatgt 
001261 tttatttgtc tgatccaggt tcatttatca gaaactagag catcatctgc acttgataag 
001321 ttagcacaag cggataacct ggtgaatgac agactgttgc aagacggagg ctctagtgca 
001381 tctatagaca actatgtttc tcttgcttca agaacgtcat cagcgtcccg ttttgtgaac 
001441 aagaaaactc tgcgtccgag tctggacgtg tctggtccag tgcagccata caatcccaat 
001501 ctgaaaaact tctggtaccc agttgtcttc tccggtgacc tgaaagatga tacaatggta 
001561 acgcaatgaa tgattcaggc atttacaatg tccggagtac cagttaatga tatgttttga 
001621 tgtggtctgt gtgttctcag gtaccaatag attgttttga ggagcagtgg gtaattttcc 
001681 gaggaaagga tgggagacct ggatgtgttc agaacacatg tgctcacaga gcctgccctc 
001741 ttcatcttgg ctcagttagt gagggtagaa tccaatgccc tttccatggt aagaaaaaag 
001801 aaactttata tgaaatttca ttttggcacg cttctgctgt ttttacaatc tgattttcaa 
001861 agcatcagct agcactatgg ctatatgaaa aaaaaaagct ttcttccttt ttagaaacac 
001921 aagcttgttg cactccacaa tgtacataca ttgtgtgatg acactgataa tttataatat 
001981 ttatgtaaaa cacacaataa aatggttctt ctaaaggctc ggaactgaca taaattgcaa 
002041 tcttgaaggt acatgaaaaa tgattcagaa ccaaaatact ggaatatttg aggatttgta 
002101 acaaagaatt actctttttt taaagtcttc ccatgatcat aatgttccca ataaagtggt 
002161 agtgcaagta atatttctga tttccttttc atacccttca gggtgggagt attcaactga 
002221 tggaaaatgt gagaaaatgc cagccacgaa gttgctcaat gtgcgcatcc ggtcattgcc 
002281 atgctttgag caagaaggca tggtttggat ctggcctggt gatggcacac cggagtcgac 
002341 tatcccttct ctgcagcccc cttcaggatt tacaattcat gcagaggtaa aacgaaatca 
002401 tgtcatactg cagcaatctt ccatggtgaa agtgtcctgt gtttttcaag ttttttttac 
002461 tggactgtaa agtaatggaa tttatcttca tcatcaacag atggtgatgg agctaccggt 
002521 ggagcatgga cttctgctgg acaatctatt agatattgct catgctcctt ttgctcatac 
002581 gtccaccttt gccaagggtt ggagtgttcc aaggtattta catacatatc aactaaggac 
002641 aactggccat tgaaaatttt tcacaaatca tcatgctgat gctatattca tctttgtcag 
002701 cttggtgaag ttcttgacac ctgcatctgg gctccaaggg tactgggatc cttaccccat 
002761 cgacatggag tttcgaccgc catgcatggt cttgtcaacc actggcatct caaagcctgg 
002821 aaaactagag ggaaagagca tcaagcaatg ttccacacat ctccaccaac tccatatctg 
002881 cttgccctcc tccaggaata aaaccaggat gctgtaccag atgtccctca actttgctcc 
002941 ctggctcaag cacatccctt tcatgcacat actatggtca cattttggtg agaaggcaag 
003001 tctcaaaatt ttcagagcaa cttggtagtc actgatctcc atgtcatctc atgttagctt 
003061 gcaacttact acagtaaagt tttttccgct gtttcacacc gtcgtctata agacatcaat 
003121 ggtaatcttg tatgatcttc tgcaggtctt gaatgaggac ctacggcttg tgcttgggca 
003181 gcaagagcgg atgataaatg gcgcgaacgt atggaactgg ccagtgtcat atgacaagct 
003241 tggtatccgg tatcggttat ggagagacgc cattgagagg ggagcaaaca ggttgccatt 
003301 caataaccaa agtgagagtg gatcatagta gctgcaatgc tgcactgaca gtagcctctt 
003361 tcaactcttg tcgcatttct tggcgagatg aagatgacta tggccagaac tatagtcact 
003421 tagtcagaat atgtatatgc gcagtttgtt taggcgtgct gcgttcatcc ctgcgtggtt 
003481 catccgcctg agcttctgga gaggaaagct aatggaagga agggttgata gactgatagg 
003541 cgacaattgt tatgtgtaat tttaagtgta ctagtgagcg tgcatatgga atccatgtgt 
003601 gtaatttcaa gtgtactaat cagtgtgcac gtgg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248476 FLbaf1o01 2194
more... (Total Hit Count: 18 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ706316 whv16n5k05 824
more... (Total Hit Count: 49 )
/rice/oryzabase