cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103664     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0218800 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 6,506,356 -  6,512,979  ( - );   6,624(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 6,506,356 -  6,506,790 ( - );   435 (bp)
Exon 2 Location 6,506,919 -  6,507,019 ( - );   101 (bp)
Exon 3 Location 6,507,110 -  6,507,184 ( - );   75 (bp)
Exon 4 Location 6,507,359 -  6,507,445 ( - );   87 (bp)
Exon 5 Location 6,507,593 -  6,507,682 ( - );   90 (bp)
Exon 6 Location 6,507,759 -  6,507,815 ( - );   57 (bp)
Exon 7 Location 6,507,906 -  6,507,992 ( - );   87 (bp)
Exon 8 Location 6,508,585 -  6,508,783 ( - );   199 (bp)
Exon 9 Location 6,509,113 -  6,509,177 ( - );   65 (bp)
Exon 10 Location 6,509,502 -  6,509,606 ( - );   105 (bp)
Exon 11 Location 6,509,726 -  6,509,871 ( - );   146 (bp)
Exon 12 Location 6,510,100 -  6,510,224 ( - );   125 (bp)
Exon 13 Location 6,510,335 -  6,510,437 ( - );   103 (bp)
Exon 14 Location 6,510,521 -  6,510,596 ( - );   76 (bp)
Exon 15 Location 6,510,734 -  6,510,869 ( - );   136 (bp)
Exon 16 Location 6,511,298 -  6,511,387 ( - );   90 (bp)
Exon 17 Location 6,511,484 -  6,511,578 ( - );   95 (bp)
Exon 18 Location 6,511,698 -  6,511,763 ( - );   66 (bp)
Exon 19 Location 6,511,868 -  6,511,936 ( - );   69 (bp)
Exon 20 Location 6,512,034 -  6,512,147 ( - );   114 (bp)
Exon 21 Location 6,512,241 -  6,512,448 ( - );   208 (bp)
Exon 22 Location 6,512,545 -  6,512,600 ( - );   56 (bp)
Exon 23 Location 6,512,818 -  6,512,979 ( - );   162 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum
Os01g0218800 Os01t0218800-01 214519 J033135J09 798 LOC_Os01g11952.1 AK103664 27223


Chromosome: 1 ,  position: 6,506,356 - 6,512,979 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctgggtgatg tcgtgtgggc gaggtccggg aagaagtgcc cagcatggcc tgcggtggtg 
000061 attgacccac tgctccacgc gccagcggtc gtgttgaact cctgcatccc gggtgcactc 
000121 tgcgtcatgt tctttggatt ctcttctggc gggcatggca gggtaagctt tgtggggtgt 
000181 tggtttttgt tttgtccttg aaatccacaa cccaacattt aaatgtgatt ttttttttga 
000241 atttaaatgt ggaataagag ttccacgaag tgcaactgaa acagggtaaa ccatgtgtcg 
000301 catgggccaa acagtccctt tctgtttttt tttttttggt ttgcgtcaac ttacagtact 
000361 gtatttcttt gcatcgcagg actatggatg gattaagcaa gggatgatct ttccatttgt 
000421 ggactactta gaccggtaag ctactggcat acgttcgttt ttttttaaaa aaaatgctgc 
000481 tatggggatt tatttacctg cgtgctatct gaaatttctt tggtctccca ggtttcaggg 
000541 tcaggctttg tataaactca aggcaaacag attccgtcaa gcaattgagg aggctttcct 
000601 tgctgagcgt gggttttgtg agctcgaaat ggatgagggg tgctcactag agaagtctgt 
000661 caatgaccag tctgtccctg acgggttaca ggaagggagt ggttctaaca atgaccagga 
000721 atgtcaatcg gaggctcagg taagttccgg atgcatcaca aatgtaaaga tatgagcttg 
000781 tgactgcctt attacaactt tcagctgagc cgcaatctaa tcaacactgc aggttgttgg 
000841 caaatcaact ggatgttgtg atagttgtgg taatcgtgtt ccacccaaga tcgcgaagaa 
000901 aaagaagcaa gcgggagagc agttactctg tagacactgt gataaggtat gcggccgtac 
000961 atttgagatg ggtttttgtg tgttccatta ctgttttctg tttttatggt gccttatgtg 
001021 tgcaaatttt attatatctg cagctattgc agtcaaagca gtactgtggc atatgcaaga 
001081 aaatctggca ccacacagat ggtggaaatt gggtaagagc ttagaaatat atgtgtttcg 
001141 tcgctgttat attctacatg ttctcttgat ttgtccatgg gtcaaggctc acaacctgca 
001201 acacccttct ttgcaggttt gttgtgatga gtgtcaaatt tgggttcacg tagaatgtga 
001261 cctaacatgc atcaacatgg aggtaatctg cttcttttgt tttgatgttt atatttttta 
001321 tcctattgtt tgacacagat atcgaacagt tctacgaata ataactgtat ataatttgct 
001381 gactccagta ctgttttata ggacttagaa aatgccgatt acttctgtcc agattgcaaa 
001441 tcaaaacgca agacagtacc tcctgttgaa caaatgaaca ctccgaacag ttcagagtga 
001501 gttatttaat tttttcatcc aacctattga cttctattta acgttactca aatgattata 
001561 agcatgccac tttctaatgt atctatacac agatgtgcta gcacttctaa ggaaaaactg 
001621 ccggaaatga tacctgtgtt ctgctttggg atggacggaa tgtatttacc taagaagcac 
001681 atgtatgtat tctgcatatc ttctatttaa tctacagcca gcatgcttct ttaagcttat 
001741 tacatggata tcaatactct ttaagtgatt ttagcgtgtt ttatttctca atcccccata 
001801 tcatgtagag tcatatgttc tttgaaggac tactagattt aggtgatagg ttattttcct 
001861 aggggcatat atttctcttt tgtttcattc atctggcatg aaaattgaca cttaaccaat 
001921 ttagccatat tggatatttt gtgccacaag gcttagaagg ctcaataaga aaaacaacat 
001981 ttgaaaggtc gattgttcaa tattaaagaa attcatgtat tcctttcttt ctaaaggact 
002041 ataaactgat ttcctgatgt ggctgtggct ggtgcaactg ttggtattga ctttgtattg 
002101 ttattggcag gatactatgc caatgtaatt cttgcaaaga aaggctgatg agtctgagtg 
002161 agtgggagag acatactggt tcaaggaaga agaactggaa gatgagcgtt aaacttaaga 
002221 gcaatgggga tccattggta accttggtaa gcctttaaga tcttcattta tctgaaagtt 
002281 ggtggtctat aatgatcgct aaacttgaat tcacctagtt ttcaataaaa ttcaaaggta 
002341 tgagaacttg atatgacttc tttcatgttt gtctgacctt cagttggatg atattccctg 
002401 cgcaaatgtg aagtcttcta caccaagtat taataaagaa gagttgctga aattgctagg 
002461 tacattggct cttgagttta tgttggtttc tgcagttggt gtgtgcaact tgtttcacaa 
002521 caaatgaatt tgatgcttgc agcaaattct tttagacctg tcaatgctag atggacaact 
002581 gaacgttgtg ctgtttgtcg atgggttgag gattgggact acaataaaat tattatttgc 
002641 aacaggtatt tcctgctaat ctttgaggtt tttttgacac ccttagttta tggattcatt 
002701 atatgtttta ggactgcgtg tagctgaaaa acttgtccaa aatctttatg tgcagatgcc 
002761 aaatagctgt ccaccaagag tgctatggag cacgtgatgt acaagatttt acaaattggg 
002821 tctgtcgagc atgtgaattg ccgaaacaaa aaagagaatg ttgtctttgt cctgtcaaag 
002881 gtatcattcc tgccatgatg ttgtatgtca tcacagtatt gaatgatact gatacctcac 
002941 atttttttct gaggctttcc agtgttcctt atattatgtt tatatgatgt accccatttg 
003001 attaaattgc agtggtgctt ggtgtccatt tttcctagtc ttggttcgct gcattatatt 
003061 attttttaat gctatcagta ttcacctttt cttttttaat tgctttaggc ggtgctctca 
003121 agccaacaga tattgaccaa ctatgggttc atgttacatg tgcctggttt caacctaaag 
003181 tctcttttcc tgttgatgag acaatggagc cagccatggg catattgagc atcccttcag 
003241 agtactttaa gaaggttaag atttctcatt gttattttgt atataatgtt atgcattgga 
003301 tatttattgt ctgtttattt gttgaattcc tgtcgtgatg tttatttaca ctatgttgtc 
003361 atatgaattc caggcatgtg ttatatgcaa gcagatgcat ggtgcctgca ctcagtgcta 
003421 caagtgctct acttattatc atgcaatgtg tgcatcaaga gcaggatatc gcatggaggt 
003481 agactgtggg aacccttttc ttgcttaaat aaaaaataaa ttcattttgt gacttacgag 
003541 tcttatgatg cttgtctggg agagttttgt gcacttgtac tcgcccgctt ggtttttgaa 
003601 ttgattctgt gtactgttgc tttgaagagc gcaagcctta tgcttcattt ttccatataa 
003661 gctattccat tgaagcgtga cctgtacatt tgtttaaaat ttattctgta tcatttgatg 
003721 ttaatttatt agtcaattgt ttcttcatta atgcacagct ggatacagtt tatcataatc 
003781 gatgtttttc tgttgcttgt agttgcaata ctctgaaaaa aatggaagga acataacaag 
003841 aatggtttcc tactgtgcat ttcacaggta attttttttc accttactgt ctcaccctct 
003901 gttcaaatat atatcaattc atcaaattgt ttccattaaa aataatagtt ccaatatagg 
003961 ctcatgagtc atgactctta ttttccagac cttgttcttt ctttttgttg ttcatcttag 
004021 tagcatagcg atacattctt ttttgagcaa aatcaatagt aatctgatgc attaaattga 
004081 caagatattg gaacagttct gttgtctcag ttatttgtgg gagtggcaat tctaccttaa 
004141 aggattaagt ggcacaaatt cgtgttactt acacctgttc tactgaccct ttgcagtact 
004201 cctgacccag ataatgtctt gatagttaag acgcctgaag gagttttctc aaccaaattt 
004261 ttgccccaaa ataatgagaa acagagtggt acaagacttg tcaggaaaga gaatctacag 
004321 gagaaagtcc ttcctgctaa aatttctgac tgtccagctg caaggtgcct accttatgaa 
004381 atgctgaaaa ataaggtatt ttatgacgcc cctattctgt tttgttctgt tgctcctccc 
004441 aacagtagca gagccaggaa ttttaccctg tggggtcaaa taccattgca ttatatttta 
004501 gtgggggtca tttttgtaaa tttcaatgga cttatatgta aaaaaatgag actcacaatg 
004561 gtatttgcaa aaaaagctgt ggcgtcagct gacaatacat ggctccgtca ctgcctccca 
004621 atacaataaa agatatagtt aattggcagg gataattcac gaatttgtta cactgtccac 
004681 tttcattttg taattctttg tagcccatcc tttagacttt ttatgttctt tctccttttg 
004741 gtagtttcct ttttagttta tgtaaaattc ttagttcatc caagcaattt agattcttgt 
004801 ctgcatgggt ttctcatgct gtaatctatc cttggttttg catgttcaaa ggatgggact 
004861 cttagtggca gttatataca gttcttttgg aataatagga tgtctatcat atggatgaat 
004921 atggatctgc ctaggttttg tttctgttat aagctagctc tagcactaaa ttttctgcat 
004981 gttccagaaa gaaccaggag aggcaattgc ccacagaata atgggacccc gacatcattc 
005041 ccaagagtca attgagggtt tgaacgcttg catggtaact atcccattct aactactgta 
005101 ttgtctttct tccagcaacc attgaatgcg agaacttatg catcttaccc ccacttgtta 
005161 acaggatcaa aaggatgaaa aatccttcgc aacttttaga gaacgacttc ggtatttaca 
005221 ggtttagttt ctgacggatt gttcttttta atatttgatt tcagcatact gatacactaa 
005281 atgtttgatg atttcagaaa atagaaaaca aaagggtctc ttgtggtcga tctggaatac 
005341 atggatgggg actctttgct gctaagaaaa tccaggaggg gcaaatggta tgccatttaa 
005401 gttatatgca ttttttccaa taaaacccaa tagtttatca tggtaaatag ttagcattcc 
005461 agttctgttg tttgttgtgc atccaaatac taggagcctg ttcttaacat gtcaatggac 
005521 cacttttgtg ctaggttatc gaatatcgcg gtgaccaagt tagacgtagt gttgcagatt 
005581 tgagggaagc acgatatcac agggagaaga aagattgtta tgtaagttgt tcactgtgtt 
005641 attttgtgga ggtcatctgt tctacttttg acttgaatta tttaggcagt tctacctgtg 
005701 aataatgcaa tgatttccag ataggtcact gatctactgg aaataccaca tcttaactat 
005761 gtgtgatggt gatgattctt tcttttgcac tgcagctgtt caagatcagc gaagacgttg 
005821 tcgttgatgc aacagagaaa gggaacatag cccgcctaat taatcactcg gtaatacttt 
005881 gggtttccca tttgcatctt ctctctacct taatagccca acaaaatata acagctaaac 
005941 attatcgtca tcgctttcag tgtatgccta attgctacgc aaggatcatg agtgttggcg 
006001 atgaaaagag ccagataatt cttatcgcca aaagagacgt ctccgctggc gaagaactaa 
006061 cgtaatttgc tccttaccct gccctgtcct gatgcccctt ttataccttg agagtacagc 
006121 taactgtctc cattcctgaa gctatggatc tctacaattt tctgatccgt ctctccctct 
006181 tgtgtgcagc tatgactact tgtttgaccc tgacgagtcc gaggactgca gggtcccttg 
006241 tctgtgtaaa gctcttaact gccgtggata catgaactga agtgaacatt ctcacaagtc 
006301 acaaggctaa ccccccttaa ccatgccaaa gggctatatt ctcagattca tcatgattct 
006361 ttcgtttatt caaaggctgg ttgtcaaaca agcatcaaag tttgtgattt ttttacacaa 
006421 attttgctag atagcgaggc tggattggat ttaccggttt cagactttcg gtgagagcat 
006481 agcaggcacc tggcaattta gcaacacgct gccagagccc cttgtaaatt cttcttactt 
006541 tgatgtaata ataagatgat taagttgtta atgccttttc tccatgatga aaagaaagag 
006601 aaatgaatat ccaaaatgca tacc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ276913 rwhoh27b20 745
more... (Total Hit Count: 2 )
/rice/oryzabase