Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK288402 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os09g0457100 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 9 |
| RAP - Location, Length | 17,958,033 - 17,961,419 ( - ); 3,387(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 17,958,033 - 17,958,435 ( - ); 403 (bp) |
| Exon 2 | Location | 17,958,745 - 17,958,863 ( - ); 119 (bp) |
| Exon 3 | Location | 17,959,401 - 17,959,507 ( - ); 107 (bp) |
| Exon 4 | Location | 17,959,650 - 17,959,728 ( - ); 79 (bp) |
| Exon 5 | Location | 17,959,860 - 17,960,201 ( - ); 342 (bp) |
| Exon 6 | Location | 17,960,345 - 17,960,497 ( - ); 153 (bp) |
| Exon 7 | Location | 17,960,599 - 17,960,917 ( - ); 319 (bp) |
| Exon 8 | Location | 17,961,107 - 17,961,419 ( - ); 313 (bp) |
| Related Rice IDs | ||||||||
|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | RAP Annotated Accession No |
KOME Clone ID |
KOME Clone Name |
MSU ID | cDNA Accession No |
UniProt Accession No |
UniProt Entry Name |
| Os09g0457100 | Os09t0457100-01 | J090030B22 | 304036 | J090030B22 | LOC_Os09g28390.1 | AK288402 | Q0J185 | ABAH3_ORYSJ |
Chromosome: 9 , position: 17,958,033 - 17,961,419 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 gactagctag caagaagaag acagctggtt cagaactctc aaaacagctg tggtgtccaa 000061 gtgatcctta attctccagg gtcatttgga tggcagcctc cttcgtcatc gtcatcgtca 000121 tctccttctt catttctctt gcttttatgt gctatgtcca ctacacgagc cggcagagga 000181 ggaaactcca tggctacggc catgagaaag ccgtcaggct gccgccgggc tccatgggtt 000241 ggccttacat cggcgagacc cttcagctct actcccaaga ccccaacgtc ttcttcgcct 000301 ccaaacagaa gaggttagtt gccaattaat taaaaaccca aacatgctgc taatctctgc 000361 aacctgaaag catggacgca tgcttttgaa ggacatggat ggcaagataa tgccaagctg 000421 ccaacacaaa tactgcatgc catagttgtg ggcttgtagc tttcggcgtt attgctgatg 000481 tatggcttgt gtgtgcgtgc aggtacggcg agatcttcaa gacgcacatt ctgggttgcc 000541 cgtgcgtgat gctggcgagc ccggaggcgg cgcggttcgt gctggtgacg caggcgcacc 000601 tgttcaagcc gacgtacccg cggagcaagg agcggatgat cggcccgtcg gcgctcttct 000661 tccaccaggg cgactaccac ctccgccttc gcaagctcgt ccagggccct ctcggccccg 000721 acgccctgcg cgcgctcgtg ccggacgtcg aggccgccgt ccgctccacg ctcgcctcct 000781 gggacggcaa cgtctccagc accttccacg ccatgaagag ggtaagaatt gccagccaga 000841 gcatgaagag gaatgtgccg gaaaagcagt gctgctcgcc acgaggatgc atgtaacgtg 000901 tttgtttttt tgttcctttc agctctcgtt cgatgtcggc atcgtgacca tcttcggcgg 000961 gcggctggac gagcggcgga aagcggagct gaggcagaac tacgccatcg tggagaaggg 001021 ctacaactcc ttccccaaca gcttccccgg gacgctgtac tacaaggcga tccaggtacg 001081 cagcagaagc caggcactag atggcacgag ctgtagcata ttctagtgcc ttcctcacgt 001141 cgttcttgta cgtcctgttt gcagcaacag taggtgataa ccgatcgagt tcctttctgc 001201 atcttactaa atctgcaggc gaggcggcgg ctgcacggcg tgctgagcga catcatgcgg 001261 gagcggcggg cgcgggggga gcccggcagc gacctcctcg gctgcctcat gcagtcgcgg 001321 gcgggcgacg acggcgcgct cctcaccgac gagcaggtcg ccgacaacat catcggcgtg 001381 ctgttcgcgg cgcaggacac gacggccagc gtgctcacct ggatcgtcaa gtacctccac 001441 gaccatccca agctgctcga ggccgtcagg gcggagcagg cggcgatccg cgccgccaac 001501 gacggcggcc ggctgccgct gacgtgggcg cagacgcgga gcatggccct aacccacaag 001561 gtacgtatgc gcgaaaaata cacccatttc ccgagttttc attcgattcc cgtgtatttt 001621 tgcggttaaa ttactgacgg cgccatctgc taattccttt gttgccatct ccctcccatc 001681 cttcggttca ggtgattttg gagagcttaa ggatggccag catcatctcg ttcacgttca 001741 gggaggccgt ggctgacgtg gagtacaaag gtacgcacgt gcgcagccct acgctacaac 001801 gtggccgtag gggagccacg tccgttactc catgcatcgt gtgaaaaaaa cagtgtagat 001861 tttttttttt tagttttgct gacgggaccg tgtatttttc cttggcgtgt agggttcctt 001921 atccccaagg gatggaaggt gatgccgctc ttcaggaaca tccatcacaa cccagactac 001981 ttccaggatc cacagaagtt cgacccttct agattcaagg tatgggcctc gatcgatcga 002041 tcgatcctcg ccgcagtgct tttgatgtcg atgcatgcat ctctgaacaa actgaacact 002101 gttcctttcg atagcattaa attccctctt ctctagtcaa cggcagctct ttgtgatact 002161 gttcgtggaa tgaaattata ataagacata gttgtaatac gtcaggtgcg aataggtata 002221 ttcagtttca gaaataattt gtaccttttc tcgtcagaat atgtcagggt tttcggccat 002281 tcgacaagcc cacaaatagg ccagaattca cactcggatc agatgtatac catggaaatc 002341 caaccaacca ttaatcaact tgctgctgag tcaaaccctt atctagaaca tttgtaaatg 002401 acttaattta tctttgcata gcagccgcag caaatactag tggtgctacc aatctgcaga 002461 tagatagagc ctcaaaactg aagtaccacg agtgaaactt cttttttctg aaccttctct 002521 ttttttctgg ttgtgtgtgg aacaatgtct atgcaggtgt cgccgaggcc gaacaccttc 002581 atgccatttg ggaacggcgt gcacgcgtgc cccgggaacg agctggccaa gctcgagatg 002641 ctcgtcctca tccaccacct ggtcactggc tacaggtgcg tgcccctcca cacagattcg 002701 ccatatattc tccccttgtc gttgtggacc acaccgtgcc atggctgctg ccactccatt 002761 ggccccttcc tcccagctgc cagattccgc atacacatac cacagctgct agtacacgca 002821 tgctccaacc tgtggggtca ttcactgctc agatcgcaca gcgcctactc agcatcctag 002881 taccacatat gagcagtcac atgcatgtca ttggagacga gttggttcct caaatttcgt 002941 tgtggaacgg tgtgctgatt gacgtctgcg ttcttgattt gcaggtggga gattgttggt 003001 tccagcgacg aggttgagta cagcccattc cctgtgccca agcatggcct tctcgcgaaa 003061 ttatggaggg atgatagtgt cagtgtggaa acagatggtt gccagaacgg tgataatgac 003121 gacaatggcg tagcaatggt ttgattaggc gtttaatgta gataagctag ctagggagat 003181 atttttcttt ctttcattgc ccttctattt cctcaaggga agtccgggga gaaaaaatgg 003241 agttttcttc ttttttaact tgatcataag aaggtaatga tgatgagaat gggttctcgg 003301 aggaaaaaca aatgataatg tgtaatatca ttgacattga cccaaattaa atggcttcag 003361 cagttaatgc tgctgcattt cggctcc |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ886959 | whthls18d03 | 434 |
| more... (Total Hit Count: 6 ) | ||
