cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103498     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0101800 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 84337 -  87844  ( + ) ;   3508(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 84337 -  84600 ( + ) ;   264 (bp)
Exon 2 Location 84737 -  84830 ( + ) ;   94 (bp)
Exon 3 Location 84935 -  85086 ( + ) ;   152 (bp)
Exon 4 Location 85212 -  85299 ( + ) ;   88 (bp)
Exon 5 Location 85399 -  86681 ( + ) ;   1283 (bp)
Exon 6 Location 87291 -  87398 ( + ) ;   108 (bp)
Exon 7 Location 87500 -  87844 ( + ) ;   345 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0101800 Os01t0101800-01 J033131A17 214350 J033131A17 15348 LOC_Os01g01170.1 AK103498 11072 AP008207.2 255672756 BAF03659.1 113531276 NC_008394.4 297598437 NM_001048280.1 115433973 NP_001041745.1 115433974


Chromosome: 1 ,  position: 84,337 - 87,844 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agactgcaaa ctctgagaga gagagagaga gagagagagg ccatgcccac acagcacctg 
000061 acctctcgcc gccacgctga gctactccgc catctcctcc tagatggcgg cgccgccgtg 
000121 aaggacctcc gtctccgccg tgtcgtcccg ctcacctccg cgccccttga cgactcctcc 
000181 cccgacccgg ccggccctgc tgccaaatct ggatctgcag agacgacgcc gccggaggcc 
000241 caagacggcc gggagcgaaa gccggtaagt cttcccgact cccttcatct tcatcttcat 
000301 ctcagacgca caataaaatt cgttctagct tagcttggtg ttggtggcca tctcatctca 
000361 tctcatctca tatgtgtttt atccgggcgg ggcggattag gtcgtccagc ggtcgaagct 
000421 cgtgcacgcc ccggcctcct tcggctaccg ccgcttactg cctttcctca accaactgac 
000481 caacaccaac caaggtagta ctacaacaaa caccattctc ctcctcccaa ctaaattaaa 
000541 tggcccttgt ttcttcttac cccattccct tcccttccct tgcgttcgtg tggttcagaa 
000601 tcagaatgcc ctagtggcaa ggacaactcc aagattgatg catatgccga atctgaatct 
000661 gaagctcaac ctgatcctgt gcattgctct atcagcacca ccaaggaaga aatcaacatt 
000721 tcctcttctc atctttcaag caccaagatg gtgagtactg tctttgatgt ctccttttgg 
000781 tctcccttgt tatgctatat tcagccagat ctattcccat ctcctcttct cttcaaaata 
000841 accttgtatt aaaaatgtat gcatgtatgt ttcagtgcct ttcccggtgt cagaggtcca 
000901 ggtttgttca ccaccccagc tcatttagct acaagaggat gctgccattt gttacggaga 
000961 acggtacgat cagatgcatt ctcacatgac gcaactgtct acttagttca gggtatcaca 
001021 tcgccaattt atctcatcat gtgctactgt ctactttctc agagatcact tctcaggaag 
001081 gtcacaggac caaaattcca agactcgtac aagaaaagca atcttcaacg gatgagaatc 
001141 ttatcttgac cactggacag catcactttg ttatgtcagg agactctgct gaggaatgca 
001201 aaacagctca agtcgaaaga ttagtagaag aaaacgaatc aaaatcagac aggattcatc 
001261 ctcttggtgg aaggctgctt cagcctgctg tttctgaagc cgctcatcta gaactacaag 
001321 tcagtacagt tgaagggcaa aatctcacac aggaaagagt gctagcttca gatgcacacc 
001381 ttctatcttc agacaagggt gagtgcacat tgaaatggaa tgatgtcctg cctgctggac 
001441 agcatcagcc tgctgcctca gaagacttct ctgaagaaag caacaaagca ggagttgaag 
001501 cagtattaga agagaggaaa tcagttccag acggaaattc tgttcttgat ggcagacagc 
001561 ttcagacttt tgtttcaaaa gcttctcctc cagaaggcac agctgaaatg cagaaggcca 
001621 cacaaaaaca agcagtgact tcagatggtg atgacgaccc tctagactcc tgcaagggtg 
001681 gatctcttgc caaagagcag cctctactgc atgctacaga gttgtcagta aaagataatg 
001741 ctgaaggtga tgaggtacat caatgccaaa gcccagagtt gggaacttct gatgtttgtt 
001801 ttggtggtcc taccaaggtt gtaataccat cagtgaattc ccacaatgca ctagagcaat 
001861 gtgattctat ggcttctcta gatgaaccgt tgcttgatgt ggagatgaca tgcattcctt 
001921 tggacccttg tgctactggt gtgccctact cagtgaagga aacgcctgct ggtgttctgt 
001981 gcacgtctga tcattgttcc actggcacac ccttaacagt ggaagaaacc tccagttccg 
002041 tttctgttgt gcacattgag ccaatgtcaa gcaaagtcag cccagtacgg caaagaggtt 
002101 ccccttgttt ggaaaaacga ggcctttccc ctaagaaact atctccaaag aaaggaatac 
002161 ttaagagaca tacaaggggg tgcaagggaa tctgcatgtg cttggactgc agcacattcc 
002221 gtttacgtgc tgaccgagct tttgagttct ctaggaagca gatgcaagag gcagatgata 
002281 taatagataa cttactaaag gaggtgtcaa gtcttaggaa tctcatggag aaatctgctg 
002341 gccaagtaag tgtgatcact ggcacttcac ttttattttc ttgtccttac aatgatcaaa 
002401 ttttatagta cccttttcca agggaatgaa atgctatcat cttattttcc tgcttgtctt 
002461 ttacattaat cgtgcaactt catcaaattt aagcacttga gagtcaagat caggctctgt 
002521 acatatcaat acatggggtg gtagaatgtg ataaactttt agcaatcctt tttgagagaa 
002581 cacaaacaaa atggggatat cttctcgtac atacgtggaa tttcttgttt agatcgatga 
002641 tgccttgtat tactatcttg tccaaatata taagtagaag aagttggtag ggattgcttt 
002701 gtgcagtgaa cgtatatgta tcagaataca tgcatatgtt cagtagacat gaatggcaga 
002761 acgcgtttga tgccataatt tatcatttct caccaggacc aaaatttatg ctatcgtaat 
002821 taggttgtct ctggctctgt cagttcttcc tgcatattac tgatggacac tttcactgct 
002881 tgaagtatgt tgattgaaat atgaaattga gagaatcctg aaattgacaa aaaaacactt 
002941 tggttgagtt gcagcaggag acaaagcaaa cagcctgcca gcgggcgtca caggtggagg 
003001 tggtggccag agagcgtcgt aggcagatgt tgatggagct gaactcacat tgcaggatcc 
003061 ctgtgagtac tgtagctacc tgctctaccg ataatcagca atattcgctt taactaaaag 
003121 tagtagcagt gggaattcat ttgtttgact gtgactgact cagggaccaa gggtgaaatt 
003181 tgcacaatat gttgaagaga ggatggcgtc gtctccatca cctgattcac ctagcaggag 
003241 aagataaaca ggggaggatg tgtcctgtct gatctatcca gcttacctgg ttaatttttg 
003301 tgtagtgcag tgcaatactc ctacttggtt aatgtgttgt agagggtggg tggtctgttt 
003361 ttggaggaac agcatgtcat gtgcatcctt tgtttgacag aaaatggaag gaccatgtgc 
003421 gtggcgtact agatatatta aatatttatt attaccacca gtccagtgaa atagtagaat 
003481 gatactatct atatacacag ttttgagg

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ583891 rwhrd20b06 694
more... (Total Hit Count: 5 )
/rice/oryzabase