cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK243262     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0293500 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 7,572,967 -  7,577,667  ( - );   4,701(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,572,967 -  7,577,059 ( - );   4,093 (bp)
Exon 2 Location 7,577,477 -  7,577,667 ( - );   191 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
MSU ID cDNA
Accession No
Os09g0293500 Os09t0293500-01 J100049C05 302623 J100049C05 LOC_Os09g12240.1 AK243262


Chromosome: 9 ,  position: 7,572,967 - 7,577,667 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ctgcttttgt actagtagta gtagtaatct gcttctctct tcttcatctt cttctcttgt 
000061 cttccctttt cttctagtct atcctcgttg gctcagttct tggagaggtt ttttgttcga 
000121 gttgtgtgag agagaattcg tccattcttg atgaggtttt gggttcttgg gcacttcttg 
000181 ttctagccaa ggtgagaggt taaggttaat tcttctttag atggagcttt ttgaaaatgt 
000241 ttggttgttt tgttggtggt ttgtttgggt ttcttgatgg ttttgtggct tcttttgttc 
000301 ttggagaaat atgtaagggg ttgggttctt ttggatttta tttggggtac gaataattga 
000361 agttcgtttc tgtgctaatt tggttcgtgg gttgtatcta tcaattgtct tgattttgag 
000421 ggattaatgt gtagtttgtg cgaggaattt tgattttggt tcaaactgtt gttgttgggc 
000481 gctttccctt gcaaagattc cttgtgtttc ttccttttgg gtgttttgag tcgattcatg 
000541 ccgcgaattt gggttgaatt tgtttgccac aatgacgcgg aagtgaaatt ttgaattgat 
000601 ttttgcagag aaattgcgat ttgaatacgc tccatcgata tgtgaagcca tccaagaact 
000661 cggtggaaat caagaattca gaggccatct cgaacgagct caccatctgc ttgcaagaat 
000721 cagcgagtgc gaagttgacg tagacgacga gaagccatgg ccgcctcgcc gccgttcatg 
000781 gcggccgcgg cgttccttac gcttgtggtg gtgctgtttc gggcgccggc tcccgccatt 
000841 gccgtcggcg aggaggcggc ggcgctgctg gccttcaggc gcgcgtccgt ggcggacgac 
000901 ccggacggcg cgctggcgag ctgggtgctg ggcgccggcg gcgccaactc caccgcgccg 
000961 tgctcgtggg acggcgtgtc gtgcgcgccg ccgcccgacg gccgcgtcgc cgccgtcgac 
001021 ctcagcggca tgagcctcgc cggcgagctg cggctcgacg cgctcctcgc gctcccggcg 
001081 ctgcagcgcc tcaatctccg cggcaatgcc ttctacggca acctctcgca cgccgcgccg 
001141 tcgccgccgt gcgcgctcgt ggaggtggac atctcgtcga acgccttgaa cgggacgctg 
001201 ccgccgtcgt tcctggcgcc gtgcggcgtg ctgcggtccg tgaacctgtc gaggaacggc 
001261 ctcgccggcg gcgggttccc gttcgcgccg tcgctgcggt cgctggacct gtcgcgcaac 
001321 cgcctcgccg acgccggcct gctcaactac tccttcgccg gctgccacgg cgtcggctac 
001381 ctcaacctct ccgccaacct cttcgccggg cggctgccgg agctcgccgc gtgcagcgcg 
001441 gtgaccacgc tcgacgtgtc gtggaaccac atgtccggcg ggctcccgcc ggggctcgtg 
001501 gccaccgcgc cggccaacct gacgtacctc aacatcgccg gcaacaactt caccggcgat 
001561 gtctccggct acgacttcgg cgggtgcgcc aacctcacgg tgctcgactg gtcctacaat 
001621 ggcctaagta gcaccaggtt gccaccgggg ctcatcaact gccgccgcct cgagacgctg 
001681 gagatgtccg ggaacaagct cctctctggc gcgctgccga cattcttggt cggcttctcg 
001741 tcgctgaggc ggctggcatt ggccggcaac gagttcaccg gagcgattcc ggtggagctg 
001801 gggcaattgt gtggcagaat tgttgagctg gacttatcca gcaaccggct ggttggtgcc 
001861 ttgccggcga gctttgcaaa gtgcaagtct cttgaggtgc tcgacctcgg tggcaaccag 
001921 ctcgccggcg actttgtggc cagtgtcgtc agcaccatcg cctcgctgcg tgagctgcgg 
001981 ctgtcgttca acaacatcac cggtgtaaac ccgctgccgg tgctcgcagc ggggtgtcca 
002041 ttgctggagg tgattgatct tgggtccaat gagctcgatg gggagataat gccggatctt 
002101 tgctcgtcgt tgccatcatt gcggaagctg ctccttccga acaattacct caatggcacc 
002161 gtgccgcctt cgcttggcga ttgcgccaat ctggagtcca ttgatctcag cttcaatctg 
002221 ctggttggca agatcccaac agagataatc aggcttccga agatcgttga tctggtcatg 
002281 tgggcgaatg gcctatccgg tgagataccg gatgttctct gctccaatgg caccacattg 
002341 gagacattgg tgataagcta caacaacttc accggaagca ttccaagatc cattacaaag 
002401 tgtgtgaatc tcatctgggt gtcgctttcc ggtaaccgtc ttaccgggag cgtgcccggt 
002461 ggattcggca agcttcagaa gcttgccatt ctgcaactca acaagaatct gctatctgga 
002521 catgttccag cagagcttgg cagctgcaac aacctcatct ggcttgatct caacagcaac 
002581 agcttcaccg ggacgatacc gccgcagttg gcaggccagg cagggcttgt tccgggaggt 
002641 attgtgtcag gaaagcagtt tgcatttctc cggaatgagg ctggcaacat atgccctggt 
002701 gccggtgttc tctttgagtt ctttggcatc aggccagagc ggttggctga gttccctgca 
002761 gtgcatctgt gcccatccac aaggatttac acgggcacga cggtttatac attcaccaac 
002821 aatgggagta tgatcttcct tgatctctca tacaatggcc tcaccggcac aatcccagga 
002881 agtcttggaa acatgatgta tcttcaggtc cttaacttgg ggcacaatga gctcaatggt 
002941 acaataccgg atgcatttca gaacctcaag tcgatcggcg cactcgatct ctcaaacaat 
003001 cagctcagtg gtggcattcc tccaggcctt ggtggtttga atttccttgc agattttgat 
003061 gtctccaaca acaacctgac tggtccaatc ccttcatccg ggcagctcac cacgttcccg 
003121 ccatcccggt acgacaacaa caatggtctc tgtggcatcc ctttgcctcc ttgtggccac 
003181 aatcccccat ggggaggtag gccacgcggt tcgcctgatg ggaagaggaa ggtgattggg 
003241 gcgagcattc ttgtcggggt ggcactctcc gtgctcatac tgctcctgct gctggtcact 
003301 ctctgcaagc tcaggatgaa ccagaagact gaagaggtga gaactgggta tgttgagagc 
003361 cttccaacat ctggaacatc gagttggaag ctgtcgggtg tccgtgagcc gctaagcatc 
003421 aatgtggcga cattcgagaa gccgctgagg aagctcacat ttgcacacct ccttgaggcc 
003481 accaatggat tcagtgctga gactctcatt ggatcagggg gatttggtga ggtatacaag 
003541 gccaagctca aggatggcag tgttgtggcc atcaagaaac tgattcactt cactggccaa 
003601 ggtgaccggg aattcactgc agagatggag accattggaa agatcaagca ccgcaacctt 
003661 gtcccattgc ttggatattg caagattggt gatgagaggc tccttgtcta cgagtacatg 
003721 aaacacggca gcctggatgt tgtgctccat gacaaggcca aggctagtgt gaagcttgac 
003781 tggtcagcaa gaaagaaaat tgcaattggt tcagccaggg gcctcgcatt cctccaccac 
003841 agctgcatcc cacacatcat acaccgggac atgaagtcga gcaatgtgct tcttgacaac 
003901 aacctcgatg cccgtgtatc ggatttcggg atggcaaggc tgatgaatgc gcttgatacg 
003961 catctgagtg tgagcacact tgcaggtaca cctgggtatg tgccacctga gtactaccaa 
004021 agcttcaggt gcacgaccaa aggcgacgtc tacagctatg gtgttgtgct cttggagctc 
004081 ctctcaggta agaagccaat tgatccgact gagtttggag acaacaacct tgttggttgg 
004141 gtgaagcaga tggttaaaga gaacagaagc agtgagatct ttgatcctac attgactgat 
004201 agaaaatcag gggaagcaga gctctatcag tacctgaaga ttgcatgcga gtgcttggat 
004261 gatcgaccca accgaaggcc aaccatgatt caggtcatgg caatgttcaa agagctgcag 
004321 cttgactcgg acagtgatat cctcgatggc ttttcgatca attcgtcaac tatagatgag 
004381 tcaggagaga aatcaatgta atgctgtcta gttcttgcag attttgatta tccgaagtgg 
004441 taaaatatca gactagctca accattttgg ctccatggta gaaaaaaagg tagtatcctc 
004501 caattcagta ggaaaagttg taattttggt tcaaatcact gtacataata catcaaagta 
004561 tgaaggagaa cacggtggta ggatttaatt tcagaaaaaa aaggcagttc tctttacctg 
004621 gagagactag tatgtaccaa tcaaatttct tgcttttgag catcaatatt gtcaagaatg 
004681 taatacatat tagctttcct t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ658119 whhg13p10 636
more... (Total Hit Count: 3 )
/rice/oryzabase