cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK119414     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0539200 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 22,114,193 -  22,119,994  ( + ) ;   5,802(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,114,193 -  22,114,594 ( + ) ;   402 (bp)
Exon 2 Location 22,115,151 -  22,115,263 ( + ) ;   113 (bp)
Exon 3 Location 22,115,364 -  22,115,430 ( + ) ;   67 (bp)
Exon 4 Location 22,115,511 -  22,115,603 ( + ) ;   93 (bp)
Exon 5 Location 22,115,700 -  22,115,843 ( + ) ;   144 (bp)
Exon 6 Location 22,116,007 -  22,116,098 ( + ) ;   92 (bp)
Exon 7 Location 22,116,380 -  22,116,485 ( + ) ;   106 (bp)
Exon 8 Location 22,116,581 -  22,116,665 ( + ) ;   85 (bp)
Exon 9 Location 22,116,767 -  22,116,885 ( + ) ;   119 (bp)
Exon 10 Location 22,116,973 -  22,117,239 ( + ) ;   267 (bp)
Exon 11 Location 22,117,323 -  22,117,425 ( + ) ;   103 (bp)
Exon 12 Location 22,117,547 -  22,117,656 ( + ) ;   110 (bp)
Exon 13 Location 22,117,745 -  22,117,854 ( + ) ;   110 (bp)
Exon 14 Location 22,118,102 -  22,118,209 ( + ) ;   108 (bp)
Exon 15 Location 22,118,401 -  22,118,502 ( + ) ;   102 (bp)
Exon 16 Location 22,118,613 -  22,118,758 ( + ) ;   146 (bp)
Exon 17 Location 22,118,850 -  22,119,195 ( + ) ;   346 (bp)
Exon 18 Location 22,119,509 -  22,119,994 ( + ) ;   486 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os09g0539200 Os09t0539200-01 001132F12 114597 001132F12 21540 LOC_Os09g36810.1 AK119414 2621 AP008215.2 255678666 BAF25717.1 113632036 NC_008402.2 297610002 NM_001070338.1 115480418 NP_001063803.1 115480419 Q0IZZ8 BGA12_ORYSJ


Chromosome: 9 ,  position: 22,114,193 - 22,119,994 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tcgcccgcgt cgccgccaac cccaccccgc cccaccccac cctacccgcc gccgccgctg 
000061 gccgttcccc cctcgtagta gagccccccc gcgcgcgcgc cgcaggttcg gatggccgcc 
000121 cgcgtcgcgg ccgcggtggc ggcggcgctc ctcgccgccg cgctgctcct cccgggcgcc 
000181 gcggcggagt ggaccctcac gaagaagggc accgtcgtct cctacgacga gcgctccctc 
000241 atgatcgacg gcaagaggga cctcttcttc tccggcgcca tccactaccc acggagcccg 
000301 cccgagatgt gggataagct cgtcaagacg gccaagatgg gcggcctcaa caccatcgag 
000361 acgtacgttt tctggaacgg ccacgagccc gagcccggga aggtatattg atctctcttg 
000421 cagtagattc agcgctctac caaaaatgct acttttgacc attcgtctta ttcaaaattt 
000481 tttgtgcaaa tatgaaaata tttatgtcat gcttaaaaaa tatttgatga tgaatcaagt 
000541 cacaataaaa taaatgatac ttcctccgtc cctaaatgta agcatttttg aggttgacac 
000601 aggtattaag aaagtaggtg agaatgattg aagaaggtgt gtgattggtt gaaaagagaa 
000661 agtaggtgaa aaagaatggt tgtgattggt tgagagaaga aggtaggtag aaaaatagct 
000721 tcattttgag acaaagtact gtgctagaaa tagctacatt ttgggacgga tgtagtagtt 
000781 acataaattt gttgaataag acgaatggtc aaaagttgga caaaaagtca acggcgtcat 
000841 aaattaaaat atggaggtag tagtaaatta gaagcctgca gcctttgatt ttcagtatca 
000901 tctcgtacat agacagtttc agattcatga catttgttca tctgttgttg cattgcagta 
000961 ctatttcgaa ggcagattcg acttgatcag gttcctcaac gtgatcaagg ataacgatat 
001021 gtacgcgatt gtgcgtatag ggccattcat ccaggcagaa tggaaccatg ggttcgtgtg 
001081 aatcatctca gtggtttgcc ttttgcaatt gtgatcatct cggtgaatct aattgctcca 
001141 tgcttgatct gttttcctgc gcatttccca gtggtttgcc ttattggctt agggagatcg 
001201 gccacattat attcagggct aacaatgaac ctttcaaggt aatcatagac ttgcatgtgt 
001261 gatatgcaat tgtgctgaat ttgtttcatg ctgatgaccc gctggttttg tcatgaagag 
001321 ggagatggag aagttcgtga ggtttatagt gcaaaagttg aaggatgcgg agatgtttgc 
001381 acctcaagga ggacccatca ttctatcaca ggtcaattta attatacctg tgtgatggta 
001441 tctaccaagt cagcttatgt gctccatacc aacgcatatt aacccataat atgtgtaatt 
001501 atgacagatt gagaatgagt acgggaatat aaaaaaagat cgcaaagtag agggggataa 
001561 atacctggaa tgggcagctg aaatggccat tagcacaggg ataggagttc cttgggttat 
001621 gtgcaagcaa tcaattgctc caggagaagt ggtaactttc tgattgtctc agcgtccata 
001681 gttagcaaca caatgatata tccaattgtc caaaactgcg aagcacttcg atagaacaag 
001741 ttcctgtgtt ccaaaatatg caaatacttg tactacttca ttctgctctt taatttatgc 
001801 ctccctctca ctagatccct acctgcaacg gaaggcactg tggagacaca tggactctac 
001861 tcgataaaaa caagcctcgt ttgtggactg agaattggac tgcacagtaa gtttgatccg 
001921 tactgaacat tctacttgat cggttttttt tttcatagtt ggtactaatc gaatgaaatg 
001981 aagtatgtaa ctctgatgct ctgattagct tatgatcatt caaacattta ttgcatggtt 
002041 cttgcatgca gtcgcaagta tcattgtact gatattgtca gcactatgat tgtgaaccga 
002101 aaatgtgttg gtttcagaag ttgcacttat catatgccaa tttatcgaaa ttaatattaa 
002161 aagaactatt ttcttggttg cacacagatt cagaaccttt ggtgaccagc tagctcagcg 
002221 ttcagctgag gacattgcat atgctgtgtt acgttttttt gccaagggtg ggacgctggt 
002281 aaactactat atggtatgtg ttttggtttg ttttttctct ctattaaatg ttaagttata 
002341 acaattgcca gtttgtaaag ggattacata ttaaattgtt gcgaacagta tcatggtgga 
002401 acaaattttg ggaggacagg tgcttcatat gtgttgactg gatactatga tgaagctcct 
002461 atggatgaat acggtcagat ttgctcaata tcccttgtca tatatttctt tctgctgcat 
002521 ctatgcacgt attgattcta acaatcatgc catgtggtcc atgtttttat ttaggcatgt 
002581 gcaaggagcc caaatttggg catctgaggg acctgcacaa tgtgatcaag tcataccata 
002641 aggcttttct ctgggggaaa caatcattcg agatattggg ccatgggtat gaggttgtga 
002701 tcaactgctt ccagtgtgac agttacctgt aatttagtaa ccaatgttag ccagggttga 
002761 ttagtttcct gcacctgcag gcacacaact atgagttacc tgaagataaa ctgtgcctgt 
002821 ctttcctctc caacaacaac accggggaag atggaacagt ggtattccgg ggggagaagt 
002881 tctatgtgcc tagccgctct gtttccatcc ttgcagattg caagactgtg gtctacaata 
002941 caaagagggt gtgtgtattg cataaattta ctgaaaacaa gttacggcct atcttaaata 
003001 tatttcaata acagaaatcg ttgatggctt attccacata tgttacggta ggtgtttgta 
003061 cagcatagtg aaagatcatt ccatactact gacgagacta gtaagaataa tgtgtgggag 
003121 atgtactcag aggctattcc gaagttccgc aaaaccaagg tcaggacaaa gcaacccctg 
003181 gagcaatata accagacaaa ggacactagt gactatttgt ggtacaccac aaggtatttt 
003241 ttttttcaaa tatcactcct ttgttccatg tcaatgtaat agtagctttt tatctgcttt 
003301 tctcacagac aagaatttac ttgactgttt gtttttgttt atgatggcgc acagttttcg 
003361 cttggagtct gatgatttgc cctttagacg cgatattagg cctgtgattc agatcaaaag 
003421 cactgcacat gcgatgatag gatttgccaa tgatgccttc gtaggtaact tggaccaagt 
003481 ctataactcc catatatcac aaattgcagg cactaaactt tgtactgaaa aaaaaattaa 
003541 caacctgctt aggtactggg cgtggaagta agagggagaa gagcttcgtg tttgaaaaac 
003601 ccatggatct gagagtaggc atcaaccata ttgcgatgtt gtcgtcgtcg atgggaatga 
003661 aggtatagtc catgagaatg cttaatgtgt gtcaaacatg agaaaactct cttgccgtct 
003721 tgtaatagtt attacagcag cagcagcagt tttggtgaaa atagcaacca caaatagtct 
003781 agatcctaac ttgagtggcg gtggttgaca ctgtatatgt aggattgtta aaatcttgaa 
003841 cgaagttttc tccttttatt tttattttta aaaaggctct aattatgcaa acttgtgtat 
003901 cctttgcagg acagtggtgg tgaacttgtt gaagtaaagg gcggcattca ggactgcgtg 
003961 gtacagggtc tcaacacagg gaccttggac ttacaaggaa atggttgggg tcataaggta 
004021 ctggctattg ccctctagag tgattgggat ttagatagga agtttttttt ttttaaaaaa 
004081 aagaaatcgg ttcaaatttg aacaaaattc caaggaatga ggaaagcatg cttttccttg 
004141 gcgcagtgcg taatgtgctc atacagttga actgataagt gataactctg tatgtgggtt 
004201 tcaaacaggc caggttggaa ggcgaggaca aggagattta cacagagaaa ggaatggccc 
004261 aatttcagtg gaagccggca gagaatgacc tgccaatcac gtggtacaag gtaggctgta 
004321 caagcaaaaa aggaacacct gagtgtttgc cagcatcata catgcattcg attatttgct 
004381 tccaattctc agtgtcacta tctattcatt ggcatgacag agatactttg atgagccaga 
004441 cggagacgat cccattgttg ttgacatgag ctctatgagc aagggcatga tatatgttaa 
004501 cggagaaggc attggtcgct actggacctc attcataact cttgccggac acccttctca 
004561 atcagtgtaa gcaagttcct acactaccat acaagtgggt tgcatataca caacgaaatt 
004621 tattctcact ttcattatgt tttctctccg tttacagata tcacattcca cgagcgttct 
004681 tgaaacccaa gggcaacctc ttgattatat tcgaggagga gcttggcaag ccaggtggca 
004741 tcctcatcca gacggtgagg agagatgaca tctgcgtgtt catctcggag cacaacccgg 
004801 cacagatcaa gacgtgggag tcggacggcg gccagatcaa gctcatagcc gaagacacga 
004861 gcacccgggg caccttgaac tgccccccga agaggaccat ccaggaggtc gtcttcgcca 
004921 gcttcggcaa cccggagggc gcgtgcggca acttcactgc tggcacctgc cacactcctg 
004981 atgcaaaggc gatcgttgag aaggtacaca cttcaaacaa acacttgcca atgtaccaga 
005041 acatcatcat ctaagtgata tgttttcttg aacgaaatcg gcaagatgcc aatttttttt 
005101 taatagagaa ggagtaaaat gtacaaaaat cgtatttaca gaaaagcggc cgcggcccta 
005161 gtaaccaaaa acaattacac tgttagccag gcggcaaggt gccttgcacc cgccaggctc 
005221 caagtttttg cctcctcctt tatctaagtg atatgttggt gacttgtaat atcgtatact 
005281 tccattgatg tctgatcttt ggaatgaaac gagtaggaat gcctcggcaa ggagtcgtgc 
005341 gtgctgccgg tggtaaacac ggtgtacggc gcggacatca actgccccgc gacgacggcc 
005401 acgctggcgg tgcaggtgag atgcaaggta tcaggggcgc aggcggctta ggaagaaggg 
005461 atgctgctga ttgacacatt gtttcaattt ggctcctctt gcttgtgtaa ttcatctcgt 
005521 tttggttctc attgatgagt cttgagtgcc ttgtgtgatt aaaatttgga agagacatgc 
005581 cttttgggga tcatgggggg tattaatatg caacaggaag gtagctgctg atagactcga 
005641 agatgtcttc tattcttaat cctctcctat catatgtatt gattctgtag gtgttgaaaa 
005701 taatattaac catcacaggt tgacagacag tttgtagttc agtttgttta gatatattga 
005761 cagtttgtgc actaataata tgaagctgtt gttacttgct at

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ261395 rwhh2l15 729
more... (Total Hit Count: 4 )
/rice/oryzabase