cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK107258     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0294300 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 7,635,626 -  7,638,961  ( - );   3,336(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,635,626 -  7,636,154 ( - );   529 (bp)
Exon 2 Location 7,636,467 -  7,636,778 ( - );   312 (bp)
Exon 3 Location 7,636,881 -  7,637,020 ( - );   140 (bp)
Exon 4 Location 7,637,312 -  7,637,375 ( - );   64 (bp)
Exon 5 Location 7,637,451 -  7,637,681 ( - );   231 (bp)
Exon 6 Location 7,637,768 -  7,637,902 ( - );   135 (bp)
Exon 7 Location 7,638,609 -  7,638,705 ( - );   97 (bp)
Exon 8 Location 7,638,852 -  7,638,961 ( - );   110 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os09g0294300 Os09t0294300-01 002125G10 110109 002125G10 16868 LOC_Os09g12310.1 AK107258 24914 AP008215.2 255678666 BAF24709.1 113631028 NC_008402.2 297610002 NM_001069330.1 115478399 NP_001062795.1 115478400


Chromosome: 9 ,  position: 7,635,626 - 7,638,961 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aaaaaatctt acccgccagc gagcgcgcgg ccgtggcggc gatcgcattg gcggcgacgc 
000061 ggcgagctcc aatcccctcc tatggcggag ggggagggct cctcttccag gtgagcgcgc 
000121 acgctgccct cccctccaca ccccgcgcag cacacgcggg cgctcgctgc tcgggtcaag 
000181 tctgatgcgt ttctttgttc gttttggggg ggttgcgatg cgatgcgatg cgatgctggg 
000241 gggtttttgg tcgcaggagg tgggcgttgg gcgatccgga tgtcgtcgag gtgtcgccgg 
000301 aggcggcggc ggcggcgcgt tggagctccg cgcgcctgaa gcggaagcgc acggaaggcc 
000361 tctctgctct ctttcttctt cttctacttt cttttctttt cttttttctt tttttctttc 
000421 ttttttttat ttttgcgtct ctgaatcttg caagggtttg ggctgtctct cggtagggag 
000481 gttccaatac gcgcgtgtat cagcattggg aagaggattg gaaatggcct gattcttttt 
000541 ttttcttttc ttttgggtgc cataatgtgt tgtatgcctg ttataaaaca tggaacttgc 
000601 agtttgttca ttcttgattg atcaatggaa atccaattct gccatataga tcaccgcatt 
000661 ggcttctgta gtgattccac caagtctatt gtggtggctg gttgtgttcg tgtaatttat 
000721 ctgtcaaatg acaagatata ccccatgctg aatgtggagt cgttgggtgt aatccaactt 
000781 atagccatta ggcatatcct ctcatgaaag tagcaattgt ttactggaaa gccagcacaa 
000841 gtcatacata gttcactttg cattctgaag tatgtttttg tatcccattt ccctttctat 
000901 gtgtcttttg attgttcctg ggaattagtt tgtgccacac aagccgtgtt acgactttta 
000961 aggtccattt cacgaaaccc ctccgagaaa taacagtttc gttattgcaa ctttgagtaa 
001021 gatgcgaaga atctaatatg ctatatgttt aatcaacaga ctgttgctca cgaaataatt 
001081 gatctcgacg ccaatgatga tcctgatgga gttatgataa tttgtgagaa ggcgtcgagt 
001141 cacaagagta atcattctgt tagtcatcct tcggattggc caaagcatcc aaaggttaat 
001201 tcattggagt gtttttgttt accattgttt agtgtgctat gctaacagtt gatatatctt 
001261 tctccattga gtaattctag agtggcttgg ctgaggatgt tcctggtcca agccatcaac 
001321 ctggcacgag cacagttcta ccatggggat gcacaactcc tgggagacca cggaagcata 
001381 aggaaattaa aaccgtggat aataaaattg atgagaagta taaggcattt aagcagtttg 
001441 atactgttac cgaccacagt gatcactatt attcaatgtc aggcaaaggg aatgttcctg 
001501 aagtcaagaa ggtatgagtt tgcacgtgca cgtgctctat cttcacttga tctctgcaat 
001561 taaatgtaat cattgttttt tggcagccat ccaaggactg ggtgaggcgg attcaacatg 
001621 aatggaaagt tctggagaaa gatttgccag gtagagctct ctgttctttt atggtttatt 
001681 tactccagat gttgcacatt tgattaaggg agtgctcctt tttttcccca tactattgtt 
001741 cttccattcc tctttctgta cacgcacatt aggtgagcaa aagctctaat acatgtttac 
001801 aataaaatat gaatccgttt ttcataatgc atataatgac cttgagtata ttctctgtaa 
001861 cttctattgg atgtagctgg atgttaaaac tgaaatgcag tagttcatgt cctgactgca 
001921 tctttcctcc atattgagca ggtacaattt ttgtacgagt ttatgaggat aggatggaac 
001981 tacttagggc tgtcattgtt ggaccggcag gcactcctta ccatgatgga cttttctttt 
002041 tcgatgtata tttcccttcc cagtatccca agaaacctcc agtaaggatt tgttaataat 
002101 gtcatatgca tccataaagc tttgttattc cttctctcta ttctgagctt gcatgtgtga 
002161 catataattg gctattcttt cagctagtga actaccgctc gggagggttg cggcttaatc 
002221 caaatctcta tgatagcggg aaagtctgtc ttagcctatt gaacacttgg tctgggcatg 
002281 ggtgtgagaa gtggaaccca tccaattcaa ccatgctgca ggtcctagtc tccattcagg 
002341 ccttggtgtt gaatgcgaaa ccttatttta atgaacctgg ttatgcagct tctgctaaca 
002401 caccccaggg ggagaaaatg tccatggctt ataatgaatc gacatttctc ctatcctgca 
002461 gaacaatgct gtattctctt cggaatccac cgaaggtatg actacactac gcttacatgt 
002521 tttccttcct atttgttgtg gatatatatg ttctattctt tttcgcatcc aataatcttt 
002581 gttgtcattt ctgttgatga agaatgccta atcgttaact gtttccattg taatggtgta 
002641 aataatgtgt ctgcccgttt ggtgaagaag attaatatgc tgaattgttg ataaagatgg 
002701 gtgtgatgaa cctgtattgt tttgaatggt ctattttgct ttgccatgcg ttgatgcctg 
002761 agttccttac ataaagctgc tgaataatcc gggtgcaact tttgcagcat tttgaagact 
002821 tcgcaagggt tcatttttgc aagtacgggc gcaatatcct cgtaggatgc aaggcctaca 
002881 tgaatggtgc ccaagttgga tgccttgcag gaaacggagt gcaggatgtt gatgaaggcg 
002941 acaaaagctg ctcagcgaac ttcaaaggct ccttgaagac gttatttgat gaactcatca 
003001 aggaatttac ccggatagga gttcattgcc atgaattcca gcctcagagg gtgaatcctg 
003061 ggtctaccag agccaaggcg gacaccacat tgaggctatg ataatagtaa cgataggtgg 
003121 tcaacatgag gttgacaatt ttttttttgt ttcttgggga tcagagatat agttgttggt 
003181 gctatcctca gaaatcagga ggataggagg gcaaaaggcc tgcatcagat catgtccaat 
003241 tatctaaacc atcatgcggt tagttggttt ttgtgtatat ccctgttaaa catgtgggtt 
003301 ctattcatct aagaacagta gtttaccaca ttcatc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ933142 whchan13k17 812
more... (Total Hit Count: 13 )
/rice/oryzabase