cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK105777     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0248100 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 4,272,992 -  4,276,609  ( + ) ;   3,618(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,272,992 -  4,273,449 ( + ) ;   458 (bp)
Exon 2 Location 4,275,529 -  4,276,609 ( + ) ;   1,081 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os09g0248100 Os09t0248100-01 001202F09 108626 001202F09 3792 LOC_Os09g07350.1 AK105777 11202 AP008215.2 255678666 BAF24580.1 113630899 NC_008402.2 297610002 NM_001069201.1 115478141 NP_001062666.1 115478142


Chromosome: 9 ,  position: 4,272,992 - 4,276,609 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acccctcctc tcaggctctc actcgcgctg catgccacac tgcttcttct tcttctctct 
000061 ctctagctag ctagctagct tctctgtagg ctgtagctgc ggtggcaatg gcggcggcga 
000121 ggttgtgggt ggttgcggtg gcggtggcgg tggcggtggc agtgatggcg gcggcggtgg 
000181 aggggaagag ctacaacatc acgaagatcc tggcggcgca cccggagttc tccaagttca 
000241 acgagatgct gagcaagacg aggctggcgt acgacataaa ccggcggcag acgatcacgg 
000301 tgctggcggt ggacaactcg gcgatggcgt cgctggacca cttcaccctc cccaccatcc 
000361 gccacatcct ctccctccac atcctcgtcg actactacgg ctccaagaag ctccacgccc 
000421 tctcccatgg cgccaccgcc tcctcctcca tgttccaggt aaactaatgg cacttcacct 
000481 aattaatcac atgtattttt acataattaa cgagagtata attacctagc tatcattatt 
000541 agttttttaa ttgtttgatt aattaattat agctaggtac gtactagtac taccacagta 
000601 cccacgtgtt atcgaacatg caagctagct gatcacgtac atacagctaa ttatttattt 
000661 tcttggttac tactgtactg tattataaat ccaccttctg atagggtcgg tgctgttatt 
000721 ttcatagaca gggttcttta atttctcttg tcattggggg aaaatgttaa gcgagatctt 
000781 attgccatct tgaacaaagt atttctgatt aagattttat tttttaaaaa aaatcaatta 
000841 atttgaaata ctccagtttc aacaagttta gaataaattt aaagaaattc aagtggaccc 
000901 gaaattttcg ccatggtgct aaattaatcg agaggttcaa cgtttagttg agagataaca 
000961 cagtacatgg cagagttaat tgttgtgcaa ctacatgctc actatactta tatggttttt 
001021 ctccatgcaa gtgggctaat tgtacattta aacttagtta agcccacatg tcaatatagc 
001081 ttcgtgatta caaaaactgg ttagccagat attgaccttt taatttggtc acgaaatcca 
001141 agacgaggag tatacgtgtg aatcaagtct atattgttat agatttaatt aatgtaagtt 
001201 cagatcatat atatgtgtgg gtttagacac tcatcatcta aaaaataggt ggatttatgc 
001261 actagttaac ttaaagtatt actcatgggt tattcaagta actaagctca gctttcattt 
001321 tgtttggaag tgtaatcttg aaagtttaca tcattatgca atgcaagcat gccggttcag 
001381 aatcattttg taatattttt tgtaaaaaaa attgttggcg gtttacatcg tatactacct 
001441 ccttttttta atatatgatg tccttaactt tttgataaac atttggccat tcgttttttt 
001501 aacatttttg tttaaacata aaacaatata agtcacactt aaataacatt tggtggtaaa 
001561 tcaagtcgca gtggtaggaa tgttcttgat ttcataattt ttttgagata agaccaatgg 
001621 tagaacatct cttaaaaaaa tcaactgcct cgtatattaa gaaattgggg gagtatatat 
001681 ttcaccgtat taattatagt agggatgttc ttaattcaat taagtggaat taatggagct 
001741 gtttgaatgg caccatcaag ttgccataaa actttttgac aaagttttgt catgcgcgcg 
001801 atgcatatac aactagaaat tccaaaatcc acacatgcat gccgttgggt gccaggtcac 
001861 tgaagaacag ctaagcccag tggtgggccc aagatgacta agaaaacacg tggtaccgat 
001921 tccaccgaca aagttggttg gttagctagg attggaattt catgcatcca gttgctctca 
001981 acattatcaa gctcactccc tatttttccc atacctaatt gcatgattga tttgtgggcc 
002041 cttgcatacg cacttatcag tcatcactca tcatgaacac aaatcacaga ggatccatca 
002101 tccacgatta ggttccccat ccttctctgg aaaaaaaaat atgatactca ttaattaatt 
002161 gagccatcct ggacagatca tattatttgt caatggagac tcaacgtcta ttttgtcata 
002221 tggacagatc atatttcaca attacaagaa taccatctta gtctgaacac aaaaatgcat 
002281 gccctcagta ttatttgctt tcggatttcg gtgttgatga agttcaaaga taattaatcc 
002341 aattttctac tactctttaa tttgtgcttt tgaaccaatt aatgaagttt acagccagtg 
002401 tttacaaatt ttgttatttt catgctccac gtgatccgtc catttgtaat acaattaaat 
002461 aataatcacg atgattaatt aaataataac cacgatgatg aattaattga aatgaatgaa 
002521 aataaaattg catgcaggcg acggggtcgg cgccggggac gacggggtac gtgaacatca 
002581 cgtcgcacaa gggcgggaag atcgacttca tctcggagga cgcggacgag agcgcgaagc 
002641 cgtcgaggta cgtgaagtcg gtgaaggaga tcccctacga catctccgtg ctccaggtga 
002701 gctccgtgct gtcctcctcc gaggccgagg cgcccgtccc gccgccggcg ccggtgaacc 
002761 tcaccgagct cctctccaag aagtactgca agtccttcgc cggcctcctc gccgccaacg 
002821 ccgacgtctt ccgcgccgtc aacgagacca aggacaacgg cctcaccctc ttctgccccg 
002881 tcgacgccgc cgtcgccgcc ttcatgccct cctacaagaa cctcaccgcc aaggccaaga 
002941 ccgccatcct cctctaccac gccgtcccgg actacttctc gctgcagctc ctcaagtcca 
003001 acaatggcat ggtcaccacg ctcgccaccg ccagcgagtc caagaaggac tacagctacg 
003061 acgtccagaa taagggcgag accgtcacgc tcgacaccag ggtcgtcaac tccgccgtca 
003121 ccgccaccgt cggcgacgcc gagccgctcg ccgtctacgc cgtcaccaag ttcctcaagc 
003181 ccaaggagct ctacaaggtc gtcgaggccc ccgcgcccgc gcccgagccg tccaagaagc 
003241 acaagtcggc ggccgacgac agcagcgacg actcgtcgga cgattccggc gacgtcaaag 
003301 cccacaaggg cgccgccgct ccggcgccgc tcgcccggtg ggtgaccgcc gccgcggccg 
003361 ccgccgtagc agcattgatg ctaatggctt gatgcatgag tcagtcaatc tacactctac 
003421 agagcagagt gtgtcgaatt tgtttttttt ttttcctttt tggtatggct ggtcaattac 
003481 aaataagaaa catagatgtg tgaatgattt gtagttcttt gagttttttc tttctttctg 
003541 tggtggtttg atgtaattac tttgtaatta atatagttgt ccataatcca cggaaaaagc 
003601 taagaatgat ttcatcat

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248505 FLbaf33c22 1830
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ800502 whsct1g14 756
more... (Total Hit Count: 7 )
/rice/oryzabase