cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK105420     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os09g0544800 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 9
RAP - Location, Length 22,409,977 -  22,413,860  ( - );   3,884(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,409,977 -  22,410,905 ( - );   929 (bp)
Exon 2 Location 22,411,169 -  22,411,519 ( - );   351 (bp)
Exon 3 Location 22,412,574 -  22,413,112 ( - );   539 (bp)
Exon 4 Location 22,413,207 -  22,413,323 ( - );   117 (bp)
Exon 5 Location 22,413,432 -  22,413,860 ( - );   429 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os09g0544800 Os09t0544800-01 108268 001124B07 11739 LOC_Os09g37270.1 AK105420 40774 AP008215.2 255678666 BAF25746.1 113632065 NC_008402.2 297610002 NM_001070367.1 115480476 NP_001063832.1 115480477
Os09g0544800 Os09t0544800-01 108268 001124B07 11739 LOC_Os09g37270.2 AK105420 40774 AP008215.2 255678666 BAF25746.1 113632065 NC_008402.2 297610002 NM_001070367.1 115480476 NP_001063832.1 115480477


Chromosome: 9 ,  position: 22,409,977 - 22,413,860 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 atcagtgtgc ttgctctctc tcccatcgct ttcccctccc ctcgcttgcc gccgcatcca 
000061 tccaccacct ctccccctcg cggatgcgat tccctcccgc cgccgccgcc gccgccgccg 
000121 ccgccgcgac tagctagcta gctcggaggt cggaggggag gggtggtacg actacaatgg 
000181 cgagcgcgtc ggaggacgac gccggctcgg agcggtgctg cgggagctac agcccgagcg 
000241 cggacgtcag cgagtcggag acatccagcg actgctccgc gccgacgacc accaccacca 
000301 cccgccgctt cgcctcctcc tcctcccgcg gcgtcgcctc ctcctcctcc tcctcgctcc 
000361 tcccgacccc tcccccttcc tccgccgccg ccttcttcct ctccgccaag cccgccgccg 
000421 acctctccgg tttgttcttc ctaccaaaca aactctcctc tctctgctgt ttccttgttg 
000481 cgtagatctc actccacccc tcacgagatg cttcggtttg gggcttttgc tttccagagg 
000541 tggacatgat gaaggagcgc ttcgccaagc tgctgctcgg cgaggacatg tccgggagcg 
000601 gcaagggcgt ctgcaccgcg ctcgccatct ccaacgccat caccaacctc tccggtacgg 
000661 tcatgaaccc ccacattgcc gtgatttgcg acgaggagag tggtgaataa tgttgctgct 
000721 gctgttgttg ttgtttccga atccgcagcc actgtgttcg gcgagctgtg gaggctggag 
000781 ccgatggctt cggcgaggaa ggcgatgtgg acgagggaga tggactggct gctctccgtg 
000841 gccgactcca tcgtcgagct caccccgtca atccaggagc tccccgacgg cgggggacag 
000901 ttcgaggtca tggtgccgcg cccccgcagc gacctctaca tgaacctccc ggcgctcaag 
000961 aagctcgatg cgatgctcct cgccatgatt gacgggttca aggagaccga gttctggtat 
001021 gtggataggg ggatcgtggt tgatgacagc ggcgggccgt tctcgtcgtc gtcatcctcc 
001081 tgcgggcggc cgtcggtgcg gcaggaggag aaatggtggc tgccatgccc gcgggtgccg 
001141 cccaaggggt tgtcagagga tgcgaggagg aagctgcaac aggacaggga ttgtgcgaac 
001201 cagatactga aggcggccat ggcgattaac agcgatgtgc tcgcggagat ggagatcccg 
001261 gaagtgtact tggagtcact gccaaaggta aacaatcatt tcagattatc tactcattgg 
001321 tactactagt tactaataac tggtgctcta tactagaaaa aacaccactg gtgctggtaa 
001381 aaatgggcca atgtgttaaa ttgcagtgaa caggacttct tctcaccata catgcttgta 
001441 attgtagctc aactggtgaa agtgggagtg cctttatggc aatgtggtcc gttcgcttga 
001501 gctagctgtg ttgctatcac actatcatct gtcttaaatc caatttattt ccattcttgt 
001561 ttgtacagcc tgccattttt ttcacaagga atcaattcat gtgtagtaga gttaaagtca 
001621 ctgtttttcc ttgttacaga aataagctaa ttaatgtctt tccagtgcaa ttctcatgta 
001681 ttttgtgagg gggtattagc atattgcaca ctgtcttggt ttacttcttg ctgccttata 
001741 tggcaagatg attttagcat ctgatctgga atcttgcaac cagtattcca ttttaatgaa 
001801 aagttgaaaa cattcttacc aattatcagt ggaagctgac agttgatggc atttagaatg 
001861 caaagaactt catcatataa attagcttat gatggagagt attgtaaaca ttaaacagat 
001921 acctgggcga agctcaaatt cggcttcttt cttgtctgtg cttgtacacc atcacgcgca 
001981 aaaataagct agtgatgcat agtattctag ttaaggcatt aatttcccaa atgtaattca 
002041 tgtataggtt gctcaacctg gtcatgaata tggcatctag gcgttgactt ttaggcttgt 
002101 tgtgtaatgt gctttagaag acgcaatatt gaaattccat ggcatctttt taacttttgt 
002161 tctgtaattg aatataaatt atttgaactg tatctttaaa tgaatattca agtcgcttct 
002221 gatatccttt actgtgtgtt tatgtgctta atgagtacct tcctaaaaga gttgttctta 
002281 actggtaatg atatctctct gagttccaca catagtaacc tcttcttttt tttttctgca 
002341 gagtggtaaa tcttgcttgg gtgagataat ttaccgatat ataacagctg aacaattctc 
002401 accggagtgc ctcctcgatt gcttggatct gtcatcagaa caccacacac ttgaagtagc 
002461 taacagaata gaggctgcca tccatgtgtg gaggttgaag ggccaaaaga aatccacgcc 
002521 tcaagcaaaa tcaaagaaat cttggggtgg aaaagtgaag ggacttgttg gagatacaga 
002581 aaagagtcat gttttgtccc aaagagctga tgggttgttg caaagcttaa gattgcgata 
002641 ccctggtttg ccacaaacct ctctcgacat gaacaagatc cagtataaca aggttattcc 
002701 tcacatttta tcttagttga atatgtcaaa caagttgggc acttgggctt agagttagca 
002761 ttgtatggtt cattcacctt ctatttcatc aaaaccgagc atgctagcat gccatactaa 
002821 gatctgaatt atatgaatag ttacattaga acctttctgt ttttaatatc acttaactta 
002881 ttctcttcaa aaaaaatcag tttactgtca acataatcac aatattcatc tttttttctt 
002941 gtgtttcttg tccaggacgt tgggcagtcc atactagaga gttactcaag ggttctggag 
003001 agcttggcat ttaacataat tgccagaatt gatgatgtaa tttatgtaga tgatgcaaca 
003061 aagaagtctg ccgctgctga ctctgtttcc atcttcaatc gtggcattgg cgtaccagtt 
003121 cagaagagga tctccccaag cccgttctca attcagcata caccatatgc ctctccattt 
003181 gctacaccca ctttctgctc ctccactcca gttacaggca gccctggaag agtacagcct 
003241 ccattgaaca aagacaactt accgacaaaa caagaggtta aagttgagaa gctgttttct 
003301 ggtgatatcg agaaggtctg gacgtatgcc gggaacctta gcgcaaggaa agacgcagga 
003361 gatgcccctg aaagagactg aaaggcagtg aagaaagttc ttcagatctt tagacgtgtc 
003421 tcagcaaggt caacaggttt caacacatcc tgttctggtc tctagctaga ttttccctgt 
003481 acagaagcaa catgattcat ttttttgtgc tttcttagcg agccaagggt cgtctagccc 
003541 tacttacaac aagtaaggga atgactcttt gagtcttgat cgcatctgaa caagtcatag 
003601 tttcacgtag ctgcctctgt cggacatgta ctcttcttgt tcatgtttat actagctggt 
003661 ttagttagca gcaagtgatt gaacttcaga tgctgcagtt cttttttttt ttttttgtcc 
003721 ctggaggcat cggttcccta acaatcaact gcacttgcag tgcaatgtat catgattttc 
003781 tgatgctgtt gtatatggca cctaatggac agatctgacg ctcttcagtg actctgaaga 
003841 ctttcttata tcaactgtga atctgtgatc gatcacaact gctg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ679871 whok18d13 771
more... (Total Hit Count: 8 )
/rice/oryzabase