Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK104879 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os09g0567400 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 9 |
| RAP - Location, Length | 23,538,081 - 23,541,019 ( + ) ; 2,939(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 23,538,081 - 23,538,160 ( + ) ; 80 (bp) |
| Exon 2 | Location | 23,538,274 - 23,538,407 ( + ) ; 134 (bp) |
| Exon 3 | Location | 23,538,556 - 23,538,624 ( + ) ; 69 (bp) |
| Exon 4 | Location | 23,539,374 - 23,539,445 ( + ) ; 72 (bp) |
| Exon 5 | Location | 23,540,018 - 23,540,090 ( + ) ; 73 (bp) |
| Exon 6 | Location | 23,540,548 - 23,541,019 ( + ) ; 472 (bp) |
| Related Rice IDs | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os09g0567400 | Os09t0567400-02 | 104961 | 001044F01 | 9521 | LOC_Os09g39400.1 | AK104879 | 23160 | Q6VAK4 | HP1_ORYSJ |
| Os09g0567400 | Os09t0567400-02 | 104961 | 001044F01 | 9521 | LOC_Os09g39400.2 | AK104879 | 23160 | Q6VAK4 | HP1_ORYSJ |
Chromosome: 9 , position: 23,538,081 - 23,541,019 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 gattccgatt gcgctcgccc atggcggccg ccgctctccg cgaccagctc accgctctcc 000061 tctcctccat gttctcccag gtgaccacct accttctccc tctcctctcc tctcctcttc 000121 gccagaccta ctgcttacgg ttgcttgctt ccaattctag ctctaattaa tcggtgctct 000181 cgtcgcgatc tagggtttgg tggacgagca gttccagcag ctgcagatgc tgcaggacga 000241 ggggggcacc ccgggcttcg tctccgaggt cgtcaccctc ttctgcgacg acgccgacag 000301 gatcatcaac gagatcgcca ccctgctgtg cgtgcccccc cccctgttct ttcttgccta 000361 attcgatttc tccctcgtgc tgccgtgctg ttaccatggg attgagtttt tcccccctcc 000421 agcttccacc catgtgtttg atcggtttga tttttttttt ttaacatttg tgcagggagc 000481 aacccgtcgt caacttcgat aaggtcgacg cctacgttca tcagctcaaa ggcagcagcg 000541 ccaggtgatc atccccttct acttctactc tacatttggt ttctttctgt acaccatttg 000601 tctgatgatg catatcttgc ctgcctgtgg tttgtgtatc aaatgttcaa ttgacatgaa 000661 gttcctgcgg tgcccttttt tcatgtgtaa agtagcagca taacaaacct tttgtttcgc 000721 aaacaattgt ggtacaaaac cgtcttattg tttgcaacca tcatactggt agggataagt 000781 ggtatcccac tgctcgagcc aactgttgtt aagcgaacaa tggtatgcgt gatagataat 000841 ggctctattg gtctatggct atggcatttc aactaaaatt atttttgcta atcatggcaa 000901 atgatttcaa tttttcattt tctggtgtct tttcatatat attacaaaaa acaataccgg 000961 ttagattatt tactctgtag cctcatgtcc cagtatcagg gtgtttacca gtttacttgc 001021 cagcaccttg ccatttattt tcttctataa taaatggaaa ttgttattgt aatgcttgtt 001081 gacatgtaga gagtgtgtat tactattatt gaccatgctt attgccccgg tattgttgtt 001141 gatgaatatg ttgacgttaa aacctcatct ttatttgtca atgctaccac cttgggaaca 001201 ggacatgcta tatatagtac tttataaaca ctcctatgat caaaccaagt tggcattgtg 001261 tttctgattg gagttctttt tggcatattt cagtgttggt gctcagaaag tgaagttcac 001321 ttgcatgcag ttccgtcagt tctgtcagga caaaagcaga gatgggtgag tattcagtaa 001381 cttattatat gtacatgcca caccataatc atgctttgat ctttgtattg tttgaattcc 001441 attcatgtat ttaaacctga tagtcagcca tgtctcgcat gggactactt tatgcatgta 001501 tactttatgc aatctgattt gcatcctgca acttcatata ttttgatacc gtagcacttg 001561 gttcgttgcc tcaacatgct agtccttgcc gattctcatg caatcagtga tcccctaggt 001621 ggcgacatag ctcatcttgg tggcacctag gtgccaccct cttatatatc cttcccagct 001681 gatttatcct gtctgggtgg ctgttaggtg ctagtttcta ttctgcggct tgactagcct 001741 agcgccttgg ggagcactgc atgtaattgt gctggctcca gactcctgtc tatatgctac 001801 tatacagcaa caaattctaa gatggcttga tttttccaac taaaactaag ttgcaagctt 001861 gcaatttctg ttcagtttca tttctgttat tttatcttcg caactttaga taatgtggta 001921 tgcttgcata atttcaggtg ccttatggca ttggctgttg tgagaaacga cttctatgat 001981 ctgcgcaaca agtttcagac tatgcttcag gtagtacctt atcttctcca ttggcttttg 002041 acttacaaaa attcactaac tatgaggtgc cacacaaggg tcgatagtat atcatataac 002101 tcaaataatg tcctttgttt ttttttagac tgataatctc cttggttatg gcatatatga 002161 tttgacagtt gacaccaagt tatgttggaa gtttctgaaa gctttacttg agggtgtgtt 002221 tgttaatttt cttggatatg tttggatggt tgtataggat agtcccaagc agtcatcagt 002281 gtttttcttt acctgcttaa aaattgaagt ttaatatctg gatagcaacc aaaactttgg 002341 aacttgattg attttttatg tgaattttcg ttctccagct gctcattcag ctttcatgtt 002401 gagcatcata aagctgctgt tgatggttcc tggatcttaa ttattgacat ggtgtgtttt 002461 gatgtagctg gagcagcaaa tccaggctta tgatcccaag cagcaataat tgaagcaaaa 002521 gagtgtagct gcatgtgatc tcacatgata aatgtatctt tgaagatgta gaccatgttc 002581 aatgggcttc tggcttagag tgtgtgcgcg tgtgcagaat caaatcattt ggtttgaggc 002641 ttcatgcttc caactttgag ctcataaccc tttaattgtt agtgacaact gatcgtctag 002701 tgtcgatgta cctgttacct gtctgtgttc ggttgtctgc cacctttgca aactcttact 002761 ggttgtctgg tgacttgttt agctggcttg tgactttagg aagggaaagt gtgtgaaatt 002821 gcaccataat ttctgactta agagttgtga agtcttgatg ctgggtggta tacaagtcta 002881 taaacaacga tcaccctgtt taatatcaac atgaacaagc atccgtattc agttttgag |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| BJ455130 | rbaak35d19 | 539 |
| more... (Total Hit Count: 3 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ829102 | whatlal28n21 | 488 |
| more... (Total Hit Count: 14 ) | ||
