cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK101247     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0441900 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 17,117,150 -  17,121,850  ( + ) ;   4,701(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 17,117,150 -  17,117,681 ( + ) ;   532 (bp)
Exon 2 Location 17,118,894 -  17,118,952 ( + ) ;   59 (bp)
Exon 3 Location 17,120,108 -  17,120,152 ( + ) ;   45 (bp)
Exon 4 Location 17,120,239 -  17,120,283 ( + ) ;   45 (bp)
Exon 5 Location 17,120,699 -  17,121,850 ( + ) ;   1,152 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os09g0441900 Os09t0441900-01 212089 J033032C18 12667 LOC_Os09g26999.1 AK101247 19837 AP008215.2 255678666 BAF25201.2 255678930 NC_008402.2 297610002 NM_001069822.1 115479386 NP_001063287.2 297609540
Os09g0441900 Os09t0441900-01 212089 J033032C18 12667 LOC_Os09g26999.2 AK101247 19837 AP008215.2 255678666 BAF25201.2 255678930 NC_008402.2 297610002 NM_001069822.1 115479386 NP_001063287.2 297609540
Os09g0441900 Os09t0441900-01 212089 J033032C18 12667 LOC_Os09g26999.3 AK101247 19837 AP008215.2 255678666 BAF25201.2 255678930 NC_008402.2 297610002 NM_001069822.1 115479386 NP_001063287.2 297609540


Chromosome: 9 ,  position: 17,117,150 - 17,121,850 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tctcttccct ctctctcttt ctctctccaa accccacgca cgccgcgtcg ccgcctcctc 
000061 ctctccatct ccgctgctat tattgcccgc gcagacgcag gccaccatcc ttcctctcgc 
000121 tcacgctcgc tgctatatgg gggtcctcct catcgcatcg catcgcatca cctcgcacgg 
000181 gcgcgcgcgc cgtgccgtgc cgctagctcg atccgcctcg tacgccagct cgctcgctcg 
000241 ctcccccacc ccgctgctgc acggctgcgc ccgcgctgtc ccctgtcccc ccgctcgccg 
000301 cggcgattta tacccaccac gccccctgct gctgctataa tgcccatgag tgaaggcggc 
000361 gaggggtggt tctgagttgg ccgttggcgt gctgcgtgtg gagatggggg aggaggcggt 
000421 ggtgatggag gcgccgaggc ccaagtcgcc gccgaggtac ccggacctgt gcggccggcg 
000481 gcggatgcag ctggaggtgc agatcctgag ccgcgagatc acgttcctca aggtgagcgc 
000541 cccgcggcgg cggcggctgc gtttttctct ataggtttct ctttcacact cgctcgctcg 
000601 aaattctcgg ggcccgagct ctacttgctt cgtcttcctt tgactttacc gattaatttt 
000661 aaaaaaaagg agatccgatt cgccgcgcat ttttcaaaac ccaagcggcc gagtacggag 
000721 ctacccgcta ctgcaagtag gatgctgtga agtgtacagt aatggcgttg ttaattgcgg 
000781 tagctagtgc tattctagta cttgtagtac tgtttctagg cggaggtgaa tcacggcgcc 
000841 atcaatccga ggctggcgag acaagcttgg ccctctttgg gcgtggcgcc atggctgtac 
000901 tacctttgtc gttgtttggt tgggctcctc gttggagaaa agaagagcgt gggcatggac 
000961 aactgacctg agtggccttg tcagggagag ccatagcagt ggacgtgtct atctccgcca 
001021 ttgcttcgtc gacactggac gtgcagacgg catggccatg agggctttgc acgatgggtg 
001081 gtgccgtgtt ggtgttatgg gctgccacca tggtttgagg cttttgatgt tgctagattt 
001141 tgtgtttaac gagggaggga agaatgtgtt gttcttgaca ctgtgctgtg cttttaagga 
001201 gcagagattt cagaagctct tcagatatca gagaacttct ttgtagtagt aatcaaatgc 
001261 gctttagaca tctttttatc gtttcttgca aggtcagtcc ctgctttggt acccgatctc 
001321 gcttttgtgc aacatcaaag ttacacttac acagtaaagc aggaatcttt atgggaccgt 
001381 tcgtactggt caattactcc aggctttgat taatgggttt taagttttaa ccgcagattt 
001441 ggtacaagta acaaccttta tttacttttt atttctgcaa ctgtgtcttt taacatgaaa 
001501 gaatccagct ccattcaaaa gtttagtttt tattttccat tgtggtgcat ggtcactcag 
001561 cctgcagtac tgaattatca aaattttctt ttgtcatttc tctcatgtta agtgcatagt 
001621 ctattttact tcaacaggta gaaaaacttt tgtgggtttg tttctagctc aaggaggaaa 
001681 ttcatgggtt tgcatctagc acatgagaga acaatattgg tctaacacaa agctcctttt 
001741 gtaggatgag cttcacttcc ttgaaggagc tcagcccgtt tctcgttctg gatgcattaa 
001801 agagtatgta ctactgccct tcatgcatta cagatatttt gtttttaagt ttttagaaat 
001861 ttgaagagct tatgtcaagt atgaaatgtc agcttaattt tattgctgtc cttatctaat 
001921 gtcttatgct ctgttttata aaatttggtt gcattttctc ccccagggaa aaatcttgta 
001981 taagtgtgtt atgtacttat gtgtataaaa tcttgttgca cttgtatgtc acacttaggc 
002041 cctgtttaga tcctccaaaa tggcagtttg ccattttgaa gaaccttttg ccattttgga 
002101 tctaaacact agtaacaaaa cttggcaatt tggcatttgg catttgctag tctatagtag 
002161 caaattgtgc caaaaagtgc tttggaacca ctctctcttt ctttctctct ctcactttag 
002221 tgctagaatg gtaaaagttt aggatgcatc taaacaccaa ctagtacttt tacaatacta 
002281 aaacttttgc caccaaaact tttgccattt gccatttgct atttcaaatg gatctaaaca 
002341 gggccttagc aaatcaccat atgttaaaat taccttggga tgaaaaagaa aaaggaaacc 
002401 agcattgaag tcttgtttga aatgcatatg tacttgtacc attacagaaa ttcttaaaac 
002461 tgctgtcttg acagctactt atcaaacagc cccacctgca tcataacgtt cctagtggtg 
002521 cctataactc tgcctcagtt attattttgt ggcccactgg tccaacaatt tgaaaaaaat 
002581 tatattgaac taaatatatt gaacagtagt atgacgtcct ctttgcttga gttccatatt 
002641 acagctcaca gtcctgagat ttgtttcacc gattctttcc atgcgatgtg cacatattct 
002701 tattcaattt aaaaaatgaa agcagattat ttttaacaag taacctatca cgttagctta 
002761 acattgtata tttgtggtgg aattatgtaa tattccgata tcgcatttga agttttgaac 
002821 atgtgtgctc aaattgaggg acacatgact gtagtgaaag caaatataaa tgtctgagca 
002881 atggactata ctttgtattc attactacaa gttatgtcct tttgcaggtt gctaatgtcc 
002941 tcttacatta cttgtcagga taaatgagtt tgttggtaca aaacatgacc cactaatacc 
003001 aacgtatggc ctctaaactt tcagttcccc cattttaagc atgttcgctg tttatttacg 
003061 agttttgaca ttgttttttc cttttccaga aagagaagga ggcacagatc ttgccgtctt 
003121 tttcggtgga tcgggtatgt tttgatccaa tatagtttgc tcgcaggttc tgaggggcaa 
003181 gaacattcaa atatctataa tgttttctgt tggattcaac attcatcact atttccctcg 
003241 aaaaaaaagc attcgtcact attggaattg aaagtctgaa agtgcctcta gtccctttgt 
003301 atgttaaaag tcaataaaca agcagtagtt ttctatatgc cacattaata ttattgacgc 
003361 attttaaaaa gcaaactagt ccagggatgt aatcatcttt gttatctaaa actaaaaaag 
003421 gaaaaactag tgctttttta cattaacatt gatttttttg cggctgaaat tacatgtaga 
003481 aactttggca taataatctg tactactgcc aaactgagct tttacatggt gaaaatattt 
003541 tccctgcaga tcaaaattgt gtatctgcat ttcatgtctt tgctactgtt gcaagtgctc 
003601 acccaagtgc aaaagaccaa ggtgcctcaa ttgttcttgc agctcatgct gcgacgagcc 
003661 atgctgtaag ccaaactgca gtgcgtgctg cgctgggtca tgctgtagtc cagactgctg 
003721 ctcatgctgt aaacctaact gcagttgctg caagacccct tcttgctgca aaccgaactg 
003781 ctcgtgctcc tgtccaagct gcagctcatg ctgcgataca tcgtgctgca aaccgagctg 
003841 cacctgcttc aacatctttt catgcttcaa atccctgtac agctgcttca agatcccttc 
003901 atgcttcaag tcccagtgca actgctctag ccccaattgc tgcacttgca cccttccaag 
003961 ctgtagctgc aagggctgtg cctgtccaag ctgtggatgc aacggctgtg gctgtccaag 
004021 ctgcggatgc aacggttgtg gctgtccaag ctgcggttgc aacggctgtg gccttccaag 
004081 ctgcggttgc aacggctgcg gctcgtgctc ttgcgcccaa tgcaaacccg attgtggctc 
004141 gtgctctacc aattgctgta gctgcaagcc aagctgcaac ggctgctgcg gcgagcagtg 
004201 ctgccgctgc gcggactgct tctcctgctc gtgccctcgt tgctccagct gcttcaacat 
004261 cttcaaatgc tcctgcgctg gctgctgctc gagcctgtgc aagtgcccct gcacgacgca 
004321 gtgcttcagc tgccagtcgt catgctgcaa gcggcagcct tcgtgctgca agtgccagtc 
004381 gtcttgctgc gaggggcagc cttcctgctg cgagggacac tgctgcagcc tcccgaaacc 
004441 gtcgtgccct gaatgttcct gtgggtgtgt ctggtcttgc aagaattgta cagagggttg 
004501 tcgatgccca cggtgtcgta acccatgctg tctcagtggt tgcttatgtt gatctagatc 
004561 cttttttggt tgttgttttt cttgtatttt ttagttgtta ggcctttgat taagttcgaa 
004621 ctttcataaa tatatggtgt ttatcctgta aagaaatgat gatttcaagg atttttcata 
004681 gctatgagac gaggttgaac c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AV916432 bags17d05 616 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ315809 whyf20d18 635
more... (Total Hit Count: 4 )
/rice/oryzabase