cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK101104     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0492700 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 19,780,060 -  19,784,617  ( + ) ;   4,558(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 19,780,060 -  19,781,112 ( + ) ;   1,053 (bp)
Exon 2 Location 19,781,368 -  19,781,549 ( + ) ;   182 (bp)
Exon 3 Location 19,782,567 -  19,782,913 ( + ) ;   347 (bp)
Exon 4 Location 19,783,781 -  19,784,617 ( + ) ;   837 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os09g0492700 Os09t0492700-01 J033025C16 211946 J033025C16 8732 LOC_Os09g31970.1 AK101104 31764 AP008215.2 255678666 BAF25455.1 113631774 NC_008402.2 297610002 NM_001070076.1 115479894 NP_001063541.1 115479895


Chromosome: 9 ,  position: 19,780,060 - 19,784,617 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggatctcatc tcatctcggc cggtcttcga tccccaaacc cccccgcccc gccggagtcc 
000061 cccctgctcc gacgagcctc gccgcgccgc gccgatggct gtggagggcc gccgccgcgt 
000121 gccgctgccg ctgccgccgc cgacgaggcg ggggaagcag cagcagcagc agggggggga 
000181 gagggcgagg agggtgcagg ccggggacgc gctcccgctg ccgatccggc acacgaacct 
000241 catcttctcg gcgctgttcg cggcgtcgct ggcctacctg atgcggcggt ggcgggagaa 
000301 gatccgcacg tcgacgccgc tccacgtggt ggggctcgcc gagatcctcg ccatctgcgg 
000361 cctcgtcgcc tcgctcatct acctcctcag cttcttcggc atcgcgttcg tgcagtccgt 
000421 cgtctccaac agcgacgatg aggaggagga ggaggacttc ctgatcgact cccgcgccgc 
000481 gggccccgtc gccgcgcagg ctacccctcc gccggcgccg gcgccgttct cgctgctggg 
000541 gagcgcctgc gccgccccga agaaaatgcc ggaggaggac gaggaaatcg tggccgaggt 
000601 cgtggcgggg aagatcccgt cgtacgtgct ggagaccagg ctgggcgact gccgccgcgc 
000661 cgccgggatc cggcgcgagg cgctgcggcg gaccacgggg agggagatca ggggcctccc 
000721 cctcgacggc ttcgactacg cctccatcct cggccagtgc tgcgagctcc ccgtgggcta 
000781 cgtgcagctg ccggtgggcg tcgccggccc gctcgtgctc gacggcgagc ggttctacgt 
000841 cccgatggcc accaccgagg gctgcctcgt cgccagcacg aaccgcgggt gcaaggccat 
000901 cgccgagtct ggcggtgcca ccagcgtcgt gctccaggac gggatgacgc gcgcccccgt 
000961 cgcccgcttc ccctccgcgc gccgcgccgc cgagctcaag ggcttcttgg agaacccggc 
001021 caacttcgat actcttgcca tggtcttcaa taggtataaa cgacgcattc cactttaatc 
001081 ccctcttgtc cctttcactc tatgttgcac gcgcatagca aaatgacatt ttagacagtg 
001141 tggctcttgt gttggacgac acgtctgttg ccatcagtcc acatcaagac ataaatttca 
001201 ttcaacctat aattaattcc ccgctatttt gtttacaagt tttgttttac aaatcttaag 
001261 gttggatggt aagataatat aagctaattt gtggaaatat atgagcagat cgagcagatt 
001321 cgctaggctg cagagagtga agtgcgcggt ggccgggagg aacctctaca tgcggttcag 
001381 ctgcagcaca ggggatgcca tggggatgaa catggtgtcc aagggcgtcc agaacgtgct 
001441 ggactacctt caggatgact tccctgacat ggatgtcatc agcatatcag gtttttactt 
001501 caatttttaa gccatgccat gaaccagtat acttgcttta cttttgaagt ttattagtct 
001561 gcggtcacac ggcggcttat actcttgtca gcatattgat tgactagttc ttcttccaat 
001621 ggtgcgtagc atatagacat tagatagcgt tcaaacaact ttaatagacg gtggctaact 
001681 acggaagcag aacagtgaac ataaccaatt ggtggattgc ataggctcat cgtaaaccac 
001741 cgctgaaaag tttcccaaaa gcttaatcga tattgacaaa gaagagaact tttcagccag 
001801 acagtcatga actatctggg caagatagat ggttaggtct caaatttagg cactctgctc 
001861 gttttgcaca acaaaagtga ggggaattgg cgaaaatgat ttgttgaact gcaaaatctt 
001921 tctttgatgt ttgcgcttga tctaagctga tgttgacctt gttcttatta atggtgtggt 
001981 ttttaccttt tcgccatatt cctccacctg tcagctgtcg atagttctag tgctagtact 
002041 ttcaagcgat gacaagatgc cgataaaaga tgtttgacga agccaacaca tccttcactt 
002101 gcatactaca tacactcaat tttcaacata acacaagcaa tattcttatc ctgatttctt 
002161 cctgcaaggc ttggctgcca tctgtaaagc actaaaattt aaactgattc ttattgtgag 
002221 agaatctcca gagatactat gttagaaaat cctacgagtg gtgtttcttt gctctttgga 
002281 acctattgag ctcatcaagt catcataaag cagtactgtt agttaccccc atgatcacct 
002341 cctgatagca agttagtagc ttttaggtga tctgttgatg attagaacag gatatgccgt 
002401 tagctataca actgtatctt gtgtacatca caacataata gcttttaaat ctttccatac 
002461 tttttcatgc tttataattt cctaaactta tatcctcata caaacaggta acttctgttc 
002521 tgacaaaaag tcagctgctg taaattggat tgagggacgt ggaaagtctg tggtttgtga 
002581 ggcagtaatc aaagaggaag ttgtgaaaaa ggttctcaag accaacgttc agtcactagt 
002641 agaattgaac gtcatcaaga accttgctgg ttcagctgtt gctggagctt tgggtggctt 
002701 caatgcccat gctagcaaca ttgtaacagc catctttatt gccaccggtc aggatcctgc 
002761 acagaatgtg gaaagctccc agtgcatcac aatgttggaa gctgtaaatg atggcaaaga 
002821 tcttcatatc tctgttacta tgccatcaat tgaggtatta tattgtcctt taacctcagc 
002881 ttcttcgtat ttttcttaga ttgcaggcta tagagtttgt attgattatt gagtaatctt 
002941 cacctagtac taattgtttg tctcacacta ctgaaaggca gtgccttgcg ctaagcttca 
003001 ccgttatact agttagtgat taggtgctag gcaggtcctg ttacaagcat agcgcctttt 
003061 ggaacatgca ttgtggtccc tgatcagttg acacccatca tctatgtctt gtgtggaaag 
003121 ctagtgactg gtcaaaacaa tttgatgtcc ttcatgatat aggttattat tttgtttttt 
003181 ttgcccagca gatgcccttt tttagtatta tatttttgac tccaccaagg agcaagtatg 
003241 tacatgaaat taaacttgac cacaaattta atcttgaatt tatatggaaa aaccactatg 
003301 cagagttagg aagtactatg tcagaatcaa atcatttgca tgatgtgttt agctagtaca 
003361 tgttctgtcg aataaactct ttgtctttaa cgatgctaat tcatcattgt tcttggacag 
003421 ttggtattca taacctccgc gctttttttt tttaaaaaaa agaaacaagg attcctttca 
003481 tatgctgtcc agtgtccact tgctcacttg ctcttgttaa aatcaacaaa tgctagctag 
003541 atcaacagct ctcgtgtgtt ttattaatgg cttaatcttg taattttgtg tttgcttttg 
003601 cttagaaagt catctactag cctgtaggga acacctggtg gacatttatg cattagcatt 
003661 tatcttatgt ttgccaatta tatataaatt gatgaggtgt tctgtgataa ccaaaatgca 
003721 ggtgggcacg gttggtggag gcacacagct ggcctcacag tctgcttgct tggacctact 
003781 tggcgtgaag ggcgcaaaca gggaatcccc aggatcaaat gcgaggctcc tggccgccgt 
003841 tgtggctggc gctgtccttg ctggggagtt gtccctcatc tctgctcaag ctgcaggcca 
003901 tttggtccag agccacatga aatacaacag atccagcaaa gatatgtcca aggtcgcctc 
003961 ttgagcgtat catttggatc attgccgagg aaatggacaa aaccccgtaa tgttaactac 
004021 tgtctaattg tcttcttgta cccgctggag agagactgga agtggacacc caagagcttc 
004081 acatgctgat tccatgtggc atgctcgagg taaaaaaaaa aaaggaagaa aaaaaagaga 
004141 caaacccatc aggctaacgg gtgtctactc agtagagttg agtggccata tttaccaggc 
004201 ggaggatgcc gttggtggtg tatgtggcct attcgtttat tgatgtttat tattgctctt 
004261 ctacaaagtc gctaactccg gacgatgggc attcttctat cactgggttc tgtgtccaaa 
004321 gcaagcttgc attacagttc acaacccttc cttgggcgcg tcgtcggcag ctgctggatc 
004381 tttctgtcag ttactgcctc gagatgcttg tattacagtt tcagctttgt aactagccaa 
004441 ttagtttttt cgtctaatct ttttttattt taatcttgcc ctggtgatag tcggtgatgt 
004501 tcctgtaaaa aaatgttgtg gttcagggtg gttatttata attcgtgttg gtggtgat

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY839944 baet35g02 424
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ724805 whvh7c12 769
more... (Total Hit Count: 23 )
/rice/oryzabase