cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK100889     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0298700 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 7,911,013 -  7,918,542  ( - );   7,530(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,911,013 -  7,911,337 ( - );   325 (bp)
Exon 2 Location 7,912,306 -  7,913,756 ( - );   1,451 (bp)
Exon 3 Location 7,914,231 -  7,915,441 ( - );   1,211 (bp)
Exon 4 Location 7,917,970 -  7,918,332 ( - );   363 (bp)
Exon 5 Location 7,918,441 -  7,918,542 ( - );   102 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os09g0298700 Os09t0298700-01 211731 J023129A05 14037 LOC_Os09g12730.1 AK100889 25770 AP008215.2 255678666 BAF24725.1 113631044 NC_008402.2 297610002 NM_001069346.1 115478431 NP_001062811.1 115478432
Os09g0298700 Os09t0298700-01 211731 J023129A05 14037 LOC_Os09g12730.2 AK100889 25770 AP008215.2 255678666 BAF24725.1 113631044 NC_008402.2 297610002 NM_001069346.1 115478431 NP_001062811.1 115478432


Chromosome: 9 ,  position: 7,911,013 - 7,918,542 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gagagagaga gagcacccat ccatctcccc ggaggcgaaa ccctaaccca cccaacccat 
000061 cgccgccggc gaaaacccta atccatccgc cgccgaaccg aagtacacgg tgccctctgc 
000121 tccctcccac gctcgatcca ctacccgctg ctgttgacgg gaatgcggtt tccctgacga 
000181 aatcgcggtt cggcttcttg gttcttgcag atggggagac ctcgaggccg cggcggagga 
000241 ggaggaggag ggagggggag gttcggcggc ggcggggggt cccgcttctc cgccgcccgc 
000301 gatgacccgc cgccgcggcg ctcctcctcc gggtgggggg tggcaccgcc gtcgcggcac 
000361 ctgtgggtgg gcagcctctc cccgggcgtc gccgcggccg acctctcgga gctcttcctc 
000421 cggtgcggcg acgtcgaggg catctcccgt gaccccggcc ggagcttcgc gttcgtgacg 
000481 ttcgcgcggg aggaggacgc cgtggcggcg gtgcgggagc tgcaggggat ccacctccgc 
000541 ggggcgccca ttaggatcga gttttccaag ggggttagtg tcgatcgtcc tcctcccgcc 
000601 cccttcgcca cggtttgcca cgcttttacc gaattgttca tcatattccc tgtctcaaaa 
000661 tcaccagtat ccaccaatga attgtgctta tcttgtcatg gttgcaaaca cgaatcgccg 
000721 aaaaataaag caaaaactat gtttcacaac agaccaagtg tcgcgataag ttaaaattgg 
000781 tttggagttt tgctcttagt caaaaatcag accaaaacag gatcaaccta gtatgcttga 
000841 acaatgaact ataagttctc cgttctcagg catgctcgga taacacagaa ccttaatttt 
000901 gttcatttat ccgcatcctt gctatcatac gagtctttca tacaaagaga cttgtcagac 
000961 ctttggtttc actgaaacgg atagttcatt cccactatgt ttgttcatca ccgaccaata 
001021 aaaggtcgaa tgctctacag agaggaagac tgacaactca gattgcagat agttaggact 
001081 actattacat ggttttccct tgttatccca ctgggaacta aagttctcga actcaatcaa 
001141 agattcaaag ttcactaatt gtgataagca caacagttag ctgatgtctc aagtctgtga 
001201 atctacaagg agttaacttc cataacacca aagctccaaa aacagggatt ttagatctga 
001261 tgcagtacat tgctgtggcc tgactgcctg agtgataaaa atttggggaa aatatattgc 
001321 atatgaaact atctggatat tcagttttgc gcacatataa gcaaatttaa acagctcatg 
001381 agacatcaat gaaggccttc cgaaatccca gaacgtcaag atcatttaat aatcttggca 
001441 tgcccacatt aatatttttg ggctagtcgg taccctttct atcttctgca gcttatgttt 
001501 taagtttgag atggaactca aattctatta tgaagaagat aatctctcct tgcttggtta 
001561 aatagagaat gcatatgaca accactttgc tatggtatac cggtgcagga cttggtttcc 
001621 ataaattacc acaggcactc acaagagctt tttgctatta ttgtgcaacc agaatagtct 
001681 catttaaatc cttaggcatt ctattaattg acagaaaata acagcactag tttaggaaat 
001741 gtgattgaaa tgctcaatat ttagtttggt ctgaaggacc atgttgaagt tgccacttgc 
001801 acatggctga atctaacaga tcaatcttca cctttctcac ccttcatgtc atgacaagaa 
001861 ctaacaccca accagaataa tatcatttga atcctgatgc attctattaa atgacagaaa 
001921 atgacagtgg ttcagcaaat ttgattgaaa ttatcaatgt ttagtttggt ctgaaggaca 
001981 aggactacga gatgttgcca cttgcacagg cttaatctaa cagattaatc ttcacctttc 
002041 tcacccttta tgtcgcgata catgctaaca attgcaataa tatataggtt catctatatc 
002101 cctattaaaa gcagggtttg ttactttgtt agtagtgctt tggtttattt gtggcataga 
002161 aatgcatacg tttgtcttga ctagctttgt ggcttgaatt cacatagtgt atgagacagt 
002221 tttgcaattg atcacaggtt atcaatcgag ctttttgggt agttgaattg ttgtaaatag 
002281 ctctatttcc atgaagtttg atcagtgata caccatacca ccttgatgct aaaactgagc 
002341 caaagattca tgtcagatga tggaactata tcttaatcaa tgcagcatca atattgaact 
002401 gtctcgtgat gttgtaaata tggaactata ccttcgtaaa gtttgataca ccatacaatc 
002461 tagtttgata caccatacaa tcttatgttg ttatactaat attgagccaa aggttcattt 
002521 cagatgatgg aactatatct cacccaattt catcatcaat atcaaactgg cttgagtttt 
002581 ttttccccaa aaaaaagact tcatacaaaa ctcctagtta aaaacctgcc attaaagatg 
002641 acccaaaagt gccataacac tataacagaa gtcttgttca tgatatagaa attatagaac 
002701 aaatatgata ttattacaga tgatattcac aacagcagaa gtaccaaatt tctacattgt 
002761 tgtccttgtg atttatgagt atcaaatgaa aaatggattc tagcacttga tagagttgat 
002821 cccaactctc cttttgtggc cttattccaa gtttgaaaca gcaggctgtg attgcggttc 
002881 tatgtggttg tttgactgat tatttcttat cattcatatt gttttaaact gcatctggta 
002941 gggctaattg atcagaagca gcatggacat aggtagagca gaccaatctt atgtcctaga 
003001 gcttgtcagt taaatagcaa tatgagcata caagtactta tggtatctgt gttcatcatg 
003061 atccatttgc tactctggac ctgaaatatt tgaatttaca ggataaaggt tcaagtagct 
003121 ctatggatga cagatactca caacatgctg atcaaagacg ttttactgaa cgaggaagga 
003181 atcagcaatc aagtcctgaa aaatcaactg ataaatccaa aagaagcagg ccagcagaac 
003241 ctagtgaagt attatggata ggttttcctg ttggtctgaa ggtagatgag gcaactctct 
003301 gggaagcctt ttcacctttt ggtgaggttg tcaagataac tacattccca gggcgtactt 
003361 atgcatttgt ccagtacact actattgcag cggcatgcag ggcgaaggaa acactgcagg 
003421 gaaatatttt caataaccct cgagttagca tttgcttttc tcggagtgac agtgtttcag 
003481 cagaatttgg aaaaggttcc ttagatgccc catattcccc ccatttaaac tctagtgtta 
003541 gacctatatt cagggagcaa gattttgaag attttcctag ggctaggcct tttgatagtc 
003601 ctccaagaga tatgtacatg ccatctccac attatggccc taagagactt tctagagatc 
003661 atgatgatgt gggtttcagc agggataatt atttgcgata tggacctgga gtagagcctg 
003721 atcctagatc taattttgaa ccttttagga tacaagggct cggtccagaa agaaggatgt 
003781 ctgaggaccc atatgaacag cataggcgta gccctgctgg tgatgcacca tggcacaaca 
003841 ttccattcga gcgatctcag ggagccttac cattagagga ttctcggtat gctagggaag 
003901 atccataccc attttcaaag aagttgagga ctggtgaagc acatgactct gaacttcctg 
003961 aatacccttt ctctgaattt gatcgaggga aggttggctc tgcctaccca aggaggccct 
004021 tctatggtgt gccagatgat gacatacacc ccagaggcta tcaacttgct cctatgcatg 
004081 gtagaaatca tgttgatcct ttaaggaatc caactccact tgtagatagg catataccag 
004141 ggcatgcaca ggacagcttt tctaggcatg tagaagtgga aagatcaact cctgaatacc 
004201 atgaacccct tctcaaggaa gaatggaaat gggatggtac aatagcaaag ggaggcacac 
004261 caatttgccg agcgcgatgc ttccctgttg ggaaggttct taacttcatg ctgtaagtct 
004321 gggttcttca ctgtattttc ttgttcattc tgagtatcat tattgacatc tacaacatta 
004381 gctctgctta tcgtcttaat aaaaatcaca aaatttcctt catggttcaa gatatataat 
004441 acatagcaaa tatatcatag atatcgtttt gccttttaca tctaatttat actgcatgct 
004501 tttgtttgca cctgatgaag gcttttgtag agctatgttt tgttcacgtt gttcttgatt 
004561 taattatatc tctgcaccat ttgcctctac tcataatctt aataaataca gacgtttgcc 
004621 ttcacggtcc aaactacata atctagttga tcaatttcta tctgcattct tttggttgta 
004681 tctgatgaga tgcctttggt gtttatgctc tgttctattg ttctagattt gagcatctct 
004741 aagttcaaca tttagtttta aaccgctgtt gatttcatac tttcaggccc gaatttttgg 
004801 attgcactgc taggacaagc ctggagatgc tctctaagca ctattaccaa gctgccagca 
004861 gctgggtggt gttttttgtt ccagaaaatg atgctgacat ggcagcctat aatgaattca 
004921 tgaattacct tggtgataag cagcgtgcag cagtttgtaa acttggagaa aggagcagct 
004981 tatttcttgt tccaccctca gacttctctg aacaagtact gagggttcca ggtaaagtca 
005041 gcatatctgg agtcattctg aagtttgagc agtcagatcc agaagtttcc tcgccaactc 
005101 gcaaaccaga aacatttgtg agtcatttga accatgatgt tcgtgctcat gaggatctag 
005161 atgcattgag aagaatcaac ccaccagata tcaggccact tcctcagggt tcagattatc 
005221 tcgggttgtc gcctggaagc tataatccag caagtgcaca tttggttccg ccttacaagt 
005281 ttggaaatgc tccttcatat ctagaatctg aattagctca tcaaaagcat ccacctgact 
005341 cccacaggga gatagcacat gacaagcagc agcaacaccc agatgtattg ccctcaagat 
005401 ggtcagataa catttacaat ccaagtccag gttctggaaa tttgaattat ttggctgaga 
005461 gtgcgatccc acatacatca actgatagga caccagaggc atactcattt gctcctcaag 
005521 gagtaccaaa agtgagtaca tcagggtatg caccagttgc agatgaggca tcaaacatgt 
005581 cctaccctcc catgcaacct gcatcacagc aggtagttag acctcaacaa cctccatctc 
005641 tcccattatc gcttccacca gagcaacttg cacaattggc cactcttctt gcacaacaaa 
005701 accaaccagg aaaagagcct gtggacagct taaacaaaga atcaggattc atacggaatc 
005761 cacatggaca ttcttcaatg atgccacaca gctcaggttc tatccctgtc caaaactcat 
005821 tgccacctgc tccgccatct gcatcacagt tacaggttca tgcgccacca gttcaaggtt 
005881 cagtgccacc aaatccatcc attatgcata caccgaatgc tcctatgcct tctcacaaca 
005941 ctttgccttt accccctatg catccttcgg gaaatccagc tcattcttcc atgcctttga 
006001 gatcgttcgt ccctcctctt cctgaaggcc ctccacccct taggcagcac acatcaagtg 
006061 ctctacaagc gcaacctgca cttccctctg gaccacagac tagccagcaa ccgtctgctc 
006121 aggaagacca tcacggagac cctcaaaagc gccttcaagc aacattgcaa ttggcagcaa 
006181 ccctacttca gcagatacag caacaatcta aacctggtgg ccagaagtag atgcgaggta 
006241 attgtttgcc taaagatctc ttttaatttc tgtaccattt acacaagaat atgaatcatt 
006301 gtcctatttg aaccaaatcg tttatgccat caatgtaatt gctaaatggt ttgtatattg 
006361 tttaggagaa actcttgcct tgtattgttc gtttggtcat tgttttccaa acttttacat 
006421 gataatcaaa catcaaggac attgcattat catttttact cttaatgcct gtctttacac 
006481 aagtgttgta tttctgtcac ctgctagata gaattatgtt tggaaccctg gctgtcaatt 
006541 aaccagtgaa tgaaatttcg gttcaaaatt tcagaaacaa tttcattatt ttcgaacccc 
006601 ctggccagtc attctctcag ccgaaatttt ccagtttttc tctctttttt tttaatttgg 
006661 taaaagttta ttcaaattca gtcaaattat gttaattttt tcaaaaaaaa aaatcagtcc 
006721 aaaaagtgcc gaaaatcctg aattttctgg aatttcagtg ctaccgaaat ggctgagatt 
006781 ttaagcgaaa tcaaaagtga aaaccctgtt attaacatat aaattttaag gggaaaagat 
006841 atttgttgaa gaagcaggat gcaatccctc tctgtatgtg atacatttaa ttcgtctgag 
006901 tatatatata ttcgtaaact agtgggactt gggcaattat gagttggaac tattttattt 
006961 actttctcat gtttatgtag taattgtggc aaaagcagga caactttagt gagatatatt 
007021 tagtatgctt gatttaaact aaaaaatttt caatacatca tttgtgctta tgctgatgat 
007081 attttcaaat gccatagtct gaacccgctc ttcaatttca gcattccatg tcagtagtag 
007141 aaacaagaac cacctttatt tgctgcaatc accacttaca acagttatat tacctgtcat 
007201 gacaggttaa ggaaatttgc agcctgcaag gatcatatgg tgatattttc tccttattac 
007261 tgaagagcct gagagtctga aactgctggt gggcacccat acctataccg gatgttttgt 
007321 taacataggt tctgctatga attagcattg cagtttaatt ttgaaagctt actcctaggt 
007381 ggcaaccacc tccgttgtct tgtctgtata agattgcacc gttcatcttt tctctctgtt 
007441 tttgtgttaa tcaatgcata gacccatgaa taccacttcc ctttttgcat tcatacatca 
007501 tgcattcgtc tcatcgatgt gtcgtctctc 

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ700933 whsd3a15 761
more... (Total Hit Count: 7 )
/rice/oryzabase