cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK073821     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0321900 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 9,975,984 -  9,980,378  ( + ) ;   4,395(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 9,975,984 -  9,976,122 ( + ) ;   139 (bp)
Exon 2 Location 9,977,712 -  9,977,820 ( + ) ;   109 (bp)
Exon 3 Location 9,978,684 -  9,978,792 ( + ) ;   109 (bp)
Exon 4 Location 9,979,388 -  9,979,466 ( + ) ;   79 (bp)
Exon 5 Location 9,979,656 -  9,979,772 ( + ) ;   117 (bp)
Exon 6 Location 9,980,035 -  9,980,378 ( + ) ;   344 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os09g0321900 Os09t0321900-01 209998 J033069E18 11802 LOC_Os09g15320.1 AK073821 36276 AP008215.2 255678666 BAF24773.1 113631092 NC_008402.2 297610002 NM_001069394.1 115478527 NP_001062859.1 115478528
Os09g0321900 Os09t0321900-01 209998 J033069E18 11802 LOC_Os09g15320.2 AK073821 36276 AP008215.2 255678666 BAF24773.1 113631092 NC_008402.2 297610002 NM_001069394.1 115478527 NP_001062859.1 115478528


Chromosome: 9 ,  position: 9,975,984 - 9,980,378 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctctcccgca aacagcacaa aaaggcagca gctttgctct gctcgggtgt tccgccgcca 
000061 ccgccgccgc cgacgaatca ctccggcggg ctcttccctc ctcctcgtcg tcgtccaccg 
000121 gcgaccggcg cttcgtacgg tgcgtctcct ttcttgcgga aagattcttc ccttatattt 
000181 ttattttgcc ggttgatcat gggtaaagaa accatgaggg gaggagggtt aattttaatc 
000241 tgctattgtt cttgttctag ttgttttttt tttgggttca atttcgatga agctttcgtt 
000301 ttccgttgtg gtcgctggat tcatctgctg ggtgtttccg tggaaatcta ggttttcagg 
000361 tttggggggc gcactgggaa ttgggcatat gaatagttgg ggatgtagga gaattgtagt 
000421 aatgctgatc gtttggtgga attttagccg attatccaaa gttaaattcc tttgctgatg 
000481 ataggctgat tcttgatttt gaaaaacctt ttttttatgc cgcagctttt ttggctggag 
000541 tcgggagttt aactagtatc ttgttagggt tagtccttgc tgttactttt gttgtgtttt 
000601 tgtcaccttg ttggtaaaaa cgagcatcct cttggaaacg atggaggctt aaggaaaacc 
000661 ttttttagtg catagatttt ataattcact ctgtaactac ccacatagtc gcgctttgca 
000721 tgacttttga ttgtttaata aattttgtgt atgatctatt agtttaggta agcttttaag 
000781 aaggttttga cataataagt taatttgttt acaaagtatt gatttcccta gccaactata 
000841 gatttagcta agttgtacta tatgtttata agagaagtca ctataagcct catgtttctt 
000901 ctcttatccc ctctcttttt tatcatgtgt ctaggaggtg gtaccaaaac ctccggaaat 
000961 tttcatatgt ttagcctatt tgtggttttt tttaatacat gtaccctttt gaaccaatgg 
001021 ccattgttta tccaaaccct tcatctcatt gtgtaatgta tcgacacctc tatggattag 
001081 tatatttgtt gaaatttgta tactgcgaat tcagtgtatt aactcatgat tttaggggta 
001141 gtacttagta cttgctatcg attattcaac agaatgaagc tgtgcattgc cttttttttt 
001201 aaaaaaaaag aaagaaattc aggttgtcaa tgtatagtat atgttatgtc ctgtggtggt 
001261 aggtgtttct cttttttttt ctatcatgga gtttatcatg gtgcttttta ctgttcaacg 
001321 gtacgatgat atgattgtgt ctcacataat ttacaaaaat tttgactgtc tttaagagat 
001381 tctgcctatt aatagggtca aggaatgaat tatggcccac ttactgattt aatatattgg 
001441 gtaagagaaa ttgatgtggg atgcctgatg gctgctaaag gcattcaggc ctgaagaggt 
001501 tggcaggttt ccctattaca atgattaaag aaactgagat aactgactga acagttgctc 
001561 tctggttcat cattaatttg tacttatttg catgtaaaat gatcctttat ttcaagtgga 
001621 tgcttttctt ctgttaatat atatatgtta gtgttgttta tattgtcaaa aagacacatt 
001681 ctttttaata cttcattcta taagcttttc tctcttgttt cacagaagat gttgaacctc 
001741 tttaagataa agggacagaa gaaggaagag gcggcaaata caaatgggag acctcctgct 
001801 aagaagcaaa gtccaggaga attacgtctc cataaaggtt tgtttttgca gaagtttttt 
001861 tttattgtat tacttgtgtt atttggtttc tagctttctg atattatact attcaatgtg 
001921 tgctgattag tgctagattg aacttctctt tcttgctaat ttatgtattt acatctctag 
001981 aactgtgtca tacaaatgaa catgcattaa acaaggatct aaatgctaac tattatctat 
002041 atatgaaatg tccgtgaatg tacaaactat gttgtacttt tgtcaccata ttggttgagc 
002101 gtgtacttag ctttattggc cgctcttcta tagaaatatg gaccttgtgg ggagttggag 
002161 ggggcgaatg aggcggttag ggataggaca tgcagcgtgg tgtgacttgg gagtagtggg 
002221 cactagccag tactaaacag gatgttggtg ggcttgagac aaagggtggg ctgtgggtga 
002281 gtgggctgat agtatcttgc tggcccacac aagaacatgc tgctacatgt gacaaccatg 
002341 acaacatcat gacttctact tagtatgtgt taataaagag aaagatccaa atgtccaatt 
002401 ttaattttta ctaaatctgc attttcaact aaaatctaat taacgttatt tcaactcaaa 
002461 ttgaacatgt ggcacacata taattcgctt ctgaaataat tccataatga tgtttagata 
002521 tgttgattac actattgcta gaaacctatc tttttgtcca ggctcctatt taaatattaa 
002581 cataataggc atgactctca ctgtctttgg atctttttat gtgatggaaa tagttccttt 
002641 ttcgttagta tagtttttcc aaatatggat ctcgctgact attgatattg tatcttacag 
002701 acattgctga gcttaatctt ccaaagaaaa ccaacattac ttttcctaat ggaaaggatg 
002761 atctgatgaa cattgagatt actcttcggc ctgacgaagg atactatgtg taagtatatt 
002821 ctagatgttt cttttaagcc cattaaatct cttagctgtt ctattacaca tgctcttata 
002881 tcaatttagt ttttctgtac ttcaattttg actgaacatt taaactacta taaaactttt 
002941 tactgttgaa agttgccaca tgtagagtgt tacgaggcat tggatgcttc ttgacatctt 
003001 taaatcgcac gcatttaact tttgatgtac ttggagacat gtttgttgat aaatatggtt 
003061 taggaggatt agctcatatt ttacatcaca cctgacgatt tctcttgatg tagaagggac 
003121 aaagggttgt tccattcttt taaaattttc aaatacaaat aaaagtagct aataataatc 
003181 tgttgtagat tgctttcatt ttttcattag atgtttcttt ttgttccctc tcctttgctg 
003241 taaaaacatt atgaacaata tggatgacat atttgcccta aaaaacagaa gtgatggtaa 
003301 ttggaaataa atcatttgtg tgttttcaat atacacaagg tgttactttt ttcagattat 
003361 ttcaaattga agtattctaa catccaatgt cttttcgttc ataggggtgg agcttttgtt 
003421 ttcactttac aagttcctcc tacttaccct cacgagccgc ccaaggtcaa gtgcacgact 
003481 aaggtaacat agattctatt aactgtagcc tactcctttc tttatcggtt ttttttttcg 
003541 cgaacgcgca aaagaattgc acatcaatat attagaagaa aatgaatttt tgttacacaa 
003601 cgcaatcagc cagaccggct tatgccaagg gaagggcttt atcggtaata tattgatcat 
003661 ttgaccttgt aggtttatca ccctaatatt gacttggacg gaaatgtctg cctgaatatc 
003721 ctgcgtgaag actggaagcc tgtcttgaat atcaatacca ttgtatatgg tttgaacctt 
003781 cttttcattg taagtatttg ttttaggaac tgatcaatct tttattttct atcagcaata 
003841 atggcttagt agtttatttc ctattgtaaa tatgaagtgg cacatgatta aaccagattg 
003901 aacctttaca tgcagatatg tctaaactag tctgctactt gccatattac tattttaaat 
003961 ctcacgtgaa attgttgtct ttgtgggata gaactcacca tttgcactgt gttttctcat 
004021 gtaacaatta tctttgctac attacctgca gcaacccaat gacgaggatc ccttgaacca 
004081 tgatgctgcg gctgtcctcc gagatgaccc acaaaagttc cggaggaatg ttcagacggc 
004141 gatgtcggga ggctatgtcg acagggtgca ttttccaagg tgtaagtaaa ggtgtgtgtt 
004201 tgctggtgct ctgtggctgg cttctgccca ccttactcct gaataccgtt ctgcaatctg 
004261 aacaatgtga cttgcccaag aaatgacata tttgtgttac atttgagtat gaatgatgct 
004321 tggttgaaat gtactggaat catgtaagcg caacgatgtt taaactgaaa tgtcaaatga 
004381 tgtttggaac ttggc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ450436 baak29j16 606
more... (Total Hit Count: 14 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ628410 whcs15f21 813
more... (Total Hit Count: 98 )
/rice/oryzabase