cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK068174     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0297000 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 7,816,635 -  7,822,743  ( + ) ;   6,109(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,816,635 -  7,816,806 ( + ) ;   172 (bp)
Exon 2 Location 7,816,919 -  7,817,013 ( + ) ;   95 (bp)
Exon 3 Location 7,818,694 -  7,819,012 ( + ) ;   319 (bp)
Exon 4 Location 7,819,354 -  7,819,497 ( + ) ;   144 (bp)
Exon 5 Location 7,819,651 -  7,819,752 ( + ) ;   102 (bp)
Exon 6 Location 7,820,056 -  7,820,159 ( + ) ;   104 (bp)
Exon 7 Location 7,820,309 -  7,820,435 ( + ) ;   127 (bp)
Exon 8 Location 7,821,127 -  7,821,279 ( + ) ;   153 (bp)
Exon 9 Location 7,821,514 -  7,821,614 ( + ) ;   101 (bp)
Exon 10 Location 7,822,100 -  7,822,743 ( + ) ;   644 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os09g0297000 Os09t0297000-01 203776 J013129M17 3451 LOC_Os09g12560.1 AK068174 22067 AP008215.2 255678666 BAF24717.1 113631036 NC_008402.2 297610002 NM_001069338.1 115478415 NP_001062803.1 115478416 Q69TB1 HEMH1_ORYSJ
Os09g0297000 Os09t0297000-01 203776 J013129M17 3451 LOC_Os09g12560.2 AK068174 22067 AP008215.2 255678666 BAF24717.1 113631036 NC_008402.2 297610002 NM_001069338.1 115478415 NP_001062803.1 115478416 Q69TB1 HEMH1_ORYSJ


Chromosome: 9 ,  position: 7,816,635 - 7,822,743 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtggcagttg gttgggcaac gaatgcgaac ctacttctcc tagtatactg cttttacttt 
000061 agccatcgcc accaccgcca ttcctggaac ccccttccct cttcctccct cggatctctc 
000121 ctcgctcgcg cgttcgcgcc gccgccttcc cccttccccc gttgattgat tggttcgtgt 
000181 ttttcttctt ttttttttcc ttctgagggg tttcttgatg tttcctgccg tgtgatttga 
000241 tttgatttga ctttcccctt cttcttgttt tctttttctt gcagggagga ggatcaatgg 
000301 agtgcgtccg ctccggctcc ggggttcttg atcccaggtg ctctccgcgg ttcctgggga 
000361 agaagggtgg ttcgctcacg tgagtgcttc ttgatcccaa gcgctctctg ccttttcccc 
000421 ctgtttcttt ccttctttgt gagtggtggt gatctgtgat ctctcggtgg ggggtttggt 
000481 gcggactgga tcttgctggg gtttttattt attcaggcgt gttgttgaga tcactgcttt 
000541 ttttttgggt gacgattaaa ttttcagtga aagcaaatta gtatatctac cagtctgtag 
000601 tcagtatgat ggagaatgat tttttttagt tcaaaaacat tgcaatgaat ccgtggacta 
000661 atcagttatt tggatctcct caacgaacaa ttatgttagc tcaattttgt tctcaacaaa 
000721 tacagttttc ccttgtgagt tctgagcatc tggtgcacac aaaacttagt atatttgtac 
000781 tggactaaga ttactgtcta cagctccaaa atcaaaatgt attttttttt tgagttgata 
000841 ccatttagag acagtaagac atagtactat gggtttgcct atcaaatggt tgggtgggag 
000901 gaacactgaa tgttcaattt gtcttgaaga aagttaattg catatgtgat ttcccccctt 
000961 tttttattgg gagtgttgat ttgtaatctc aacggaggga taggtgctgt agaggctggt 
001021 gttttattca gacgtcgttg caatgactag ttctcttttt gtgatgattt ggtaggaaat 
001081 attcagaaaa cgaaaattaa ttctagaatt taattggtgt gccatgtacc atagcatatc 
001141 accttgatat ctaccagtct gtagttaaca tgatgcataa tgtttttctt ttagttgaaa 
001201 aaaatattgt aacgaatcca tggactaatg aactatttgg atctcctgaa cgagcagttc 
001261 cattccttac aaatctggca aagacaaaac tcaaaaaaac taaatgtgtt attgagttag 
001321 tgattttgtc tgtcaaatgg ttgagaggaa tgccaaaggt acaaatggtc tggaagaagg 
001381 gacatatctt ttattgactg tatacaacac tgaaggatgt gaagctcaat ctaggcactt 
001441 tactgttata tatatcaata aagttataaa tcaaattttc tgtcagttga gatttgacgc 
001501 gaattcacaa tacatttgat gttgttattg ctaagttaac caggctttct gatatgtgtt 
001561 gattccactg ttattaagtt gcccgactag tcacgattag ttgtaaacta gtcgtaaagt 
001621 cggtcaagct agtcgactag agggctatga ctcaaccaaa tagcaagtcg catgactagt 
001681 cgtggttact cgtagattag ttgtgattag tcatagcaaa tcaccaattc actatgccaa 
001741 ttggcttatt gtgtttagta cttcagtttt gtttcttgtt gacttattgt cttgcttgct 
001801 acttcatagt ccacagttta tactataaac agtgcttaat gcagtataat agtagtaaag 
001861 actatatatt gtatatcctg tttttgcatg accaagtcat ggactagtcg accaaatcga 
001921 taagtaggtc caggggtacc tcgactttac aacttgacaa ccatggtttg ttatatgttt 
001981 ctatgagaat atcattaggt tttttaacca tcaaaccata catcttgtta ttgattttga 
002041 tagctgctac cattgacagg tcatgtggta aagccacttc tacaaatctt gccatttgta 
002101 ccaaacacga gcaaaacttg catgggaatg ttaaaccctc acagttagca gcaagtggat 
002161 cctcttattc tgttcacaga agtccagtgc ttaagcagag acagaatctt tctgctaggt 
002221 ctacctctgc agatgtatat actacttttg atgaaaatgt cagagctgta tcttcacatg 
002281 ctgctgaaga aaaggttgga gtactcttat taaaccttgg tggcccagag acactggatg 
002341 atgttcagcc atttctattc aacctgtttg ctgacccagt aagtgatcat accacatgct 
002401 ttatacttgt tcattactga ctatttgtag ccgatttgtc aatgctattc ggcaattttc 
002461 actatttgta tattggtatg tgtgtgttcc ttttagttta tcattatgta gtcccgtaac 
002521 gttgactaaa atggtctagt aattcttgac cattaaaaaa tggttcagtt tattatatca 
002581 tactatttga accaaacaaa aacatgtcaa tttgatttta ttgtgtatgc cactatgata 
002641 tgatgtctgg attcagaatt tgtctcctat ctgttcctta tttagtatat aatgatttac 
002701 ttatatttgt actgttcagg atatcatccg tttgccaagg ctgttcaggt ttcttcaaag 
002761 accattggcc aagcttatct ccacttttag agctccaaag agtaaggagg ggtacgcttc 
002821 aatcggtgga ggatcacctt tgcggaaaat tactgatgag caggtaaaat cttgccatcc 
002881 taatcacaaa catgtgtggt ttgtcaaaac aaatttatca gcttagttaa atattagctt 
002941 tgcctactca taagttttgt gatatgaaaa aaaaaatgta ttgttgagtt tcctaactca 
003001 gttaactgtg ttacaggcaa atgctttgaa ggtggcactg aaaaagaaga atttgaatgc 
003061 taatatatat gttggaatgc gatactggta cccttttaca gaagaagcca ttgatcaggt 
003121 gaaacttcct gtctctagaa gtcctttaaa tccttcattt ctttgttaag tctcaaaaac 
003181 agtgccttgc catttttgtt caattcgttt tccatggtaa ttactttatt gtttttcttc 
003241 taacttactt agatattgct actcaatgtt attttaagta tcttcttttc atctgttgtt 
003301 gagtattcag cactcaacag catatgctgc atcgtaaact ttagatattt ctgttgttcc 
003361 ctgatttttg ttgttagttt ccaattgatt ataactgctt ctaagttttg gttgatcata 
003421 gattaagaag gataagatta caaagcttgt cgttcttcca ctgtaccctc aatactccat 
003481 atcgacaagt ggatcaagca tccgtgttct ccaaaacatt gtcaagtagg ctgctttctc 
003541 atttgaattc tcatctagtc atcttccata ttactagatc tttaaattct aatctttcag 
003601 acgctgtaga tcattaaatt ataatatttc agatgctgta gatcattaaa tattaatatg 
003661 atggcatcat gcagggagga ttcatatttt gctggattgc caatttccat tatcgaatca 
003721 tggtaccaac gtgacggtta tgtgaaatca atggctgact taattgaaaa ggaactgtca 
003781 attttttcca atcctgaaga ggtttgacca ttcccttttc cttctatttt tctccctaca 
003841 gtttcccacc tttggattgc agactgtgaa cacaatcata gtataccttt tttggtagaa 
003901 atttccttag ggatacagtt tgacatagtt cttgtattta cctgtggaca aaattcgaca 
003961 ttagatacat ccttaatctt gtctacaact aattttcagt atcactgttt attcaattat 
004021 gtatgagtac gttgtgacaa ccacatcaga gaaactaaat tatttaatgc caactacttt 
004081 taagaaaatg cactgtccat tttcagctaa ctttttgtac tagactgtgg atatagggag 
004141 tataccatga aacttgaacc acaaaaatgc attttctgaa atgctacatt gtagtgctta 
004201 cctgcctact gtatatttga ctatccagtt atccactcta gttacgtcaa ttgatgaagg 
004261 gaaattaaca ctataatttt gtaaatgagt attaatgtat gattcagggt gattcaatag 
004321 acagtgcaag tatctagtta ctttgttgtt tactcagtct gttataggta catgtcattt 
004381 tagaatgata cacgtaaacg taagtctgac cagaattata caaaaagttg gaaattgaat 
004441 agatagaata agtctgatat actaatcatg attgcaaatt tgtaatcttt aggttatgat 
004501 attcttcagt gcacatggag taccacttac ctatgttacg gatgctggag atccttacag 
004561 agatcagatg gaggactgca ttgctttgat catgggagag ttaaaatcca gaggaatctt 
004621 aaacagccat actctggctt accaggtata agacaaatta atacttattt ttatgaggcc 
004681 atcttgttta gaatgaggaa agcatcttag gatatttcta ggatatataa agtgttcgtt 
004741 tcatctcttt ttaaatggct atttttactt tgaatgtatc aactgaactt tcaccatcta 
004801 gaaaattttg tactagtgtg ttttattcct ttgctttact ggttaacaca tcattaacct 
004861 ttgtgtgcac acatggcaga gtcgagtggg gccagttcag tggctgaaac catatactga 
004921 tgaagttcta gttgaactag gtcaacaggg tgtaaagagc ctcctggctg ttccagtaag 
004981 gtaataataa ctgcacatat ttcatatttt ggcgattcag cgttttcttt tttttctttg 
005041 gtatttcctt aagaacagca acttaaacct gtatctcttt atgatagttt aatcttctgc 
005101 ctgcacttat ctcttgatgc acatatatta ttgtaaccca gcaatatttt ctggtataaa 
005161 atcattatca acgtagaaat tttgtttcat atggcataag tttcttgttg atggaaggca 
005221 tatgccattg cttgtgtgtg tgtgtgtgtg tgtgtgtgtt gtgttttatt ttgaattttt 
005281 ctcatgttca ctatttactg catggttaat ttgcttatcc atcaagtact tacaacgtaa 
005341 aactggaaac tgccctttag gttcatctca ttaaccattc aagaatggct tgttcagttt 
005401 gcatttttct tccctacatc accttgtgat taccttctag tcctaactaa tttatcatca 
005461 atcagctttg tgagcgagca catcgagacc ttggaagaaa tcgacatgga gtacaaggag 
005521 ctggctctag aatcgggcat cgagaactgg ggaagggttc cagctcttgg atgcacctca 
005581 tccttcatct ccgaccttgc tgatgcagtg gtcgaagccc tgccctccgc ttccgctctc 
005641 gtgacgaaga aggtggacga gagcgattcc gacatggacc tgatgcacta cctgagcaag 
005701 atgttcttcg gctccatctt ggcgttcgtc ctcctattgt cgccaaggct gatttccgct 
005761 ttccggaaca ccctgttgta ggtgatggtg gcttcttttg tttggttttt tgcactaggg 
005821 gtttggcttg agtaagtaga aaggcaggct cgtgggatga tagtgaatag tgatggttaa 
005881 agttcccctt ttttacagaa gtaatatgca tgaagtcatt gcaaggtagc ttaagtggtg 
005941 gttttaagca aggagcctct aggggtaaat tgccagtctg taccagtttt cttgtgctgg 
006001 tacaaggcaa gcctatcctt ttttttcttt ttttttcttt ttgttacatg agcacattga 
006061 taaaacatca ttgatatatt actaatgcat aaacaccata atttttcct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK251553 FLbaf118i17 2000
more... (Total Hit Count: 13 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ938516 whchan2e20 882
more... (Total Hit Count: 41 )
/rice/oryzabase