cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK102788     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0818400 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 36,592,169 -  36,595,571  ( + ) ;   3,403(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 36,592,169 -  36,593,121 ( + ) ;   953 (bp)
Exon 2 Location 36,594,275 -  36,594,793 ( + ) ;   519 (bp)
Exon 3 Location 36,594,877 -  36,594,990 ( + ) ;   114 (bp)
Exon 4 Location 36,595,389 -  36,595,571 ( + ) ;   183 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0818400 Os01t0818400-01 213636 J033107O14 3843 LOC_Os01g60270.1 AK102788 39857 AP008207.2 255672756 BAF06545.1 113534162 NC_008394.4 297598437 NM_001051166.1 115440702 NP_001044631.1 115440703 Q5QMM3 WOX8_ORYSJ
Os01g0818400 Os01t0818400-01 213636 J033107O14 3843 LOC_Os01g60270.2 AK102788 39857 AP008207.2 255672756 BAF06545.1 113534162 NC_008394.4 297598437 NM_001051166.1 115440702 NP_001044631.1 115440703 Q5QMM3 WOX8_ORYSJ


Chromosome: 1 ,  position: 36,592,169 - 36,595,571 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcccaatact gctcctacaa agacactgcc acattccttc tccttcctcc tgcatactgt 
000061 ctctctctct ctctctatct gatcagctgt tccgcttcct cctcttcttc tctcccccaa 
000121 ccccgtagcc ctcccaccca tcgagccagg cggcggcgcg acggccggtg gctaaggcgg 
000181 cggccggtgc caaaatctcg agcaatcgcg tcgcgccgtc tggccggctt gcgacatcgc 
000241 tcgcccgaga gcgtcgtcgt cttcgagctt gtgccgcgcg gcgccgtcgc cgcgtggtcc 
000301 gagggccccg tgccaccgcg tgcagagggc agaggcccat cgcctcctcc tcgagccacc 
000361 gcgctgccgt gtgccgtccc ccttgtcgtc ctcgagcccc tgcgtcgccg ccggccgccg 
000421 gggctcctcc tcctcgtcct cctcgtcatc gacgccccaa tcggcaccgc ctcctggtcg 
000481 ttaaaaccat cctcgggcct ttcgccaatt ggaaggcgcc atcttttccg cattctttcc 
000541 atccggattc cggccgctgt tgctgtctgg cggaatatct gtttcgccag attttcttgc 
000601 gtttcgattt ctttttatta ttttcctgag agagagagag agagagagag agagagagag 
000661 agagagagag agagagagag ggttccttcc atttcgctgc tgcgccaaag aacacaactt 
000721 tcccaattcc ttttcgcctc cctgtagagg catggagtgg gacaaggcca aggcgtcctc 
000781 cggcgaggcg gtggacgaca ggggcggagg ggaaggaggg ctcgggtacg tgaaggtgat 
000841 gacggacgag cagatggagg tgctccggaa gcagatctcc atctacgcca ccatctgcga 
000901 gcagctcgtc gagatgcacc gcgccctcac cgcgcagcag gactccattg caggtcagta 
000961 cagttcaccg agtagcttgg tgtaagggtt gcatttactc tttctgcaga aaggggggga 
001021 aaggtactct gtttatgtcg tgtactagta ctaagtttgt ttagggatgc atcattgagt 
001081 cgagtttcag atggtccctc agaaaaagaa attgtcagat ctgtagtagt agtagttagt 
001141 ttgcttttaa agttggaggc aatttggctg ggacctgttt aactattttg caaaaataac 
001201 agggatcaag tttttgtttc aggtgttttt agcagtttgc tacttcatga actgatccct 
001261 atacattgca attgctcttc cgattattat gttacattgc ttggtaatta aactgaaaac 
001321 catagaaagt gccagaacat caatttgatg cattgatagg aagttgacaa taggttgggt 
001381 ccacattgaa tattgaaatc ctaaatgcat cgttttttta tccattatgc ttattatgtt 
001441 tgatttattt gctgtaggtc atatttcatt gctactctat tacatttatt tatgttagct 
001501 gtaaaattta tctggtatac tgtattagac actactcagc ataggcacgg ttatgctttt 
001561 ttaaaatttt atcccattta gatttatact agtatttgtg tccaaagagc agttcgaatg 
001621 caacaaaaga aatttagtat agtatcacta gctagtgact cagaattgtc atgtgggacc 
001681 atttaccatt ttgtgacatg tgcacctccg caatcttctg ctatctgcag aatttgagct 
001741 tgacatgcag gaatctcata acatgttact tgtctttcac ttggtcaaac actaatgctt 
001801 ctgatgcaat tttaatcatt tcatcacact tgtacgtttt tttcgtactt atcaatttat 
001861 atcaagtact tagctagttt tctttgaagc ttattaatat ttttgtcctc gaaaattatg 
001921 tgtagtcatt gtgcattacc cttctttcag aaaagactcc aaaacatagt ttgtttatct 
001981 agggctctag gcatttgccc attctctctt tctttttttt ttaaaacttt tctttgatca 
002041 atctgctgta tacgttttaa taggacagtt tctttgctgt caactgagag ttggtttctt 
002101 cttcaggaat gaggcttggt aatctgtact gtgatcctct aatggttccc ggaggtcaca 
002161 agatcacagc aaggcagcga tggacaccaa ccccaatgca gttgcagatt cttgagaaca 
002221 tctttgacca aggcaatgga acaccaagca agcaaaagat aaaggacata acagcagagc 
002281 tctcacagca tggccagatc tcagagacaa atgtctataa ctggttccag aacaggcggg 
002341 cacgatcgaa acggaagcaa gctgctttac caaataataa tgcagaatct gaagctgaag 
002401 cggatgagga gtccccaact gacaaaaaac ccaaatcaga taggccgctt caccagaaca 
002461 tagccatgag agatcacaat agcgaaagga tctcggagat gcaccacttt gacacggagc 
002521 atgagcaaat ccgtcgtatg atgtatgcat ccaatgacag tagctcgcga tcgtcaggca 
002581 gtttgggcca gatgtccttc tacgacaatg ttatgtcaaa tccaagtacc tcctacaaac 
002641 acccttgctt catttgacac tgtaaaaccg caaagaagtt actgaaaaag tttggtttaa 
002701 ttttgcagga atcgatcatt tccttggtaa ggtggagagc cccgggagct tcccccacat 
002761 gcgatccggt gaaagctttg atatgtattg atgacgcggc aattctggat tctggttact 
002821 aggttcgttg cattagacac catactgttt tcccctgtaa aaagtgaagc tggtaacttg 
002881 ccgttcattt tgcttactga aattgcgaag tttgccttac gtccacacgt tggttatcat 
002941 ggtcttgtcg acattctacg gagaatagct agttctagtg taaacctgtt ctgttgctga 
003001 attagctgca agaagccgat aaatagcact ctgcacactt aggtgttagg tgattgtgtg 
003061 gatatttctt gatggtgagt ttgtaacgat cttctttcac tttgtcctga aggctgaatc 
003121 gatcagcgct acaaatgagt tagtagtttt aaaggttgct cttgtccatg gtaaagcttt 
003181 tggtctgata aagtctcatg atcgcgttgc catctgccag aaaattggag tttcttcgat 
003241 tgtgaagatc attgagttgg agattagaca atgcttgttg atgatactat gggcatgttg 
003301 gcaagtggca tggtttgcca gattttgact aaaccaaatg ttgcttcttg actatgtaca 
003361 atcctctata gcttcaatga gcagttttcc ctatgttgtc ctc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ860723 whsctal12a12 742
more... (Total Hit Count: 4 )
/rice/oryzabase