cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK065095     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os09g0134500 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 9
RAP - Location, Length 2,606,421 -  2,614,934  ( - );   8,514(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 2,606,421 -  2,606,818 ( - );   398 (bp)
Exon 2 Location 2,607,345 -  2,607,534 ( - );   190 (bp)
Exon 3 Location 2,607,720 -  2,607,788 ( - );   69 (bp)
Exon 4 Location 2,607,901 -  2,607,957 ( - );   57 (bp)
Exon 5 Location 2,608,034 -  2,608,095 ( - );   62 (bp)
Exon 6 Location 2,608,182 -  2,608,247 ( - );   66 (bp)
Exon 7 Location 2,608,317 -  2,608,434 ( - );   118 (bp)
Exon 8 Location 2,608,513 -  2,608,560 ( - );   48 (bp)
Exon 9 Location 2,608,650 -  2,608,775 ( - );   126 (bp)
Exon 10 Location 2,609,248 -  2,609,406 ( - );   159 (bp)
Exon 11 Location 2,610,407 -  2,610,504 ( - );   98 (bp)
Exon 12 Location 2,610,612 -  2,610,704 ( - );   93 (bp)
Exon 13 Location 2,612,029 -  2,612,225 ( - );   197 (bp)
Exon 14 Location 2,612,331 -  2,612,435 ( - );   105 (bp)
Exon 15 Location 2,612,519 -  2,612,642 ( - );   124 (bp)
Exon 16 Location 2,613,409 -  2,613,622 ( - );   214 (bp)
Exon 17 Location 2,613,908 -  2,613,981 ( - );   74 (bp)
Exon 18 Location 2,614,066 -  2,614,118 ( - );   53 (bp)
Exon 19 Location 2,614,243 -  2,614,934 ( - );   692 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Os09g0134500 Os09t0134500-01 J013001M12 200403 J013001M12 390 LOC_Os09g04890.1 AK065095 6716


Chromosome: 9 ,  position: 2,606,421 - 2,614,934 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 aaaaggaaat cgggaaatca atccccatcg tcccccaagc ctccgggggc cgaccggagt 
000061 gaggaggggg gcgaggggcg tcctccggcg ggaaacggca aaaaattttc gcgagggcct 
000121 cagggccccc aaaacttccc tcccccggaa ccccaaatcc ctaaacccct ccagtggcga 
000181 agccctagag ccgaaaccct agccagccca gccatggtga tcgcggtgga ggggggcttc 
000241 gtgcacgagg aggaggaggt ggaccaccca attcgctacc tcccacttgg ccgcgtctac 
000301 tcctcctctg ctccgtgccc tctccccaag aagccccgct ccgccgagga cggcaagccc 
000361 cccgtgatcg tctactaccg ccgccgccgt aagaagccgc gggtcgaggg gccacctccc 
000421 tcgcctgcca cagcaccacc gatgctgcac ccccgggagg acgacgagga tgaggaggtt 
000481 acacggcgga agggttctct caagtacgag ctgctgagcc tggggcaagc cccgcccgca 
000541 ttaggcgggg atggggagga gcccgcgcgg cggcgctgcc tgaggcgtag cggaggggct 
000601 gagaggaggg gttacttctc tgaacccaag aggcggcagc ggcagggcgt gcacaaggaa 
000661 gctgcctcct cggctgggag gagatggttg gagtgagttg gatctgtcta cgcttgcctc 
000721 ggaataatat cttccctcat ggccttcagt ggaagtactt catttaaaag gaactgtcaa 
000781 aaatgtgatt tgttcctgac gctggttctg tcgcaggttg gaaattgagg ctgcggatcc 
000841 actggccttt gtgggattag gatgcaaggc aaaagttctt gacaaagatt tttattagct 
000901 tctttttagg ggaatgtaag aggctgggac ctgaaccttg cagtgtatgt aggttttctg 
000961 gcccctcgat gaggattggt acaagggttc tatcacaggg tacaatgaag cgactaagaa 
001021 acattccgta tgatctctga tccttcccag tgtgaagatg ttttttcccc ttaaatcatt 
001081 gtttagttca gcaaattctc cattgtttct tagttgattg ataatgcttg cttttgctaa 
001141 tttcgtactg gattttctca ctatcaaaat tcaattttta atgccagatg ctagatacat 
001201 tttacgtttg ttgtttcttt aatttaaatt caacccctct atgtctgaat tatgaaagta 
001261 cacgatttga aagaaaatta ttaagaactc ggtttaaacg tacttactgc aggtaaagta 
001321 tgatgatggc gaatcagagg accttaacct agctgatgaa aggataaaat tttctatttc 
001381 atctgaagaa atgaagtgca ggaacttgaa atttggaatt tccaatctga acaagagggg 
001441 ctatgatgag ttgcttgccc ttgctgttag ccttcatgat taccaaggtc ttgatccagg 
001501 tgatcttgtg tgggctaaac ttacaggtac tcatcctatt gtgttttgta cctctgactt 
001561 ctggtgtttt cagctgaata ttattaattt catggttata ttttttttgt agcatgtcac 
001621 tagaatttat aatagcaatg tattcctatg acgcagattc caattatttt tagctgtatt 
001681 aatttattgc attgttgacg gaagtttgtg ttaacccact aatgcacttt gtatcgtgag 
001741 ctccattaca aatgccacat gatttcactt ctgcagaatt ttgattttac tcaatgagtt 
001801 gatgtttagg acattggcac gatctccaat atgcacattg ggacattggc acggtctcca 
001861 catttgacca ttaccttttc taatcatatg ctacatttat tttacaaaaa ttattgcatc 
001921 gaaagtagtt tttgtgcata ttagttccca gaggttttaa ggtttcgttg tacagatagt 
001981 tataagctgg tgtgaccttt atggttttct atgatgtttt catgtttttc tcttaaattg 
002041 actgacattg gtttgtaacc aatgtaagtt agtctcttgt gctttatttg cctgtggagt 
002101 gtttattctt tgaatttgaa gtttctttag ttcatacttt cctgtgtgat aaattattaa 
002161 ttacacgtac taaaagctag gggcatggag ttttgttctt tgtttaattc agtgagaagt 
002221 gattgatgca cacccttgtg aggtgttcat cttttaggag acctgaaatt aatttgtcat 
002281 ttgtttcaac aggtcatgcc atgtggccag ctgttgtggt ggatgaatca aatgttcctg 
002341 ctaacagggc tttgaagcca ggccgactag atcagtcgat acttgttcaa ttctttggta 
002401 ctcatgattt tgccaggttt gattctgtaa aaggatatct aagataatct tcatttttct 
002461 tagaaaggta ccctagaagt tatgtttttt ttacctcagg attaagttga agcaagcggt 
002521 gccctttctg aatggccttc tttcttcttt gcatcttaaa tgcaagcaag cacgcttcta 
002581 tcggagttta gaagaagcca aggagtatgt gtccaaagcc tcttttttag aactaatcca 
002641 gcatattttt ttaatcttat actgcgaggt gctcagtaca gtattcagat tccattttat 
002701 actttatagg tttctctgca cacagcttct cccagaaaat atgttgcaac tacagaaatc 
002761 catggaaaag ggcagttctg atgctaattc caataaagat gtacattctt gtgacaattt 
002821 atctgaagat aaaacagctg aaagcggagg ggattatgat gagatgactc caatagaact 
002881 aggaaatctt cgtgtgagca aattaggtat gttttaacaa ataatatgaa tagagaaaat 
002941 tttatttctt tttctaagta taccaagaag caaagtttca ggctttatag attgtcaata 
003001 atatcaacag agaagtagag aaacataaca agagcgaagt cacatatttg catattatta 
003061 caaaaataag ttagaaatat ggcgcaagca tgaatatcct tttcttttgt ggaaatgaca 
003121 gccttcttgt tcctaccaag ttgaaggata ccacactttt ttttgtgaaa tataattttg 
003181 cactatctat gagctatggt gctgaagaat gctaaaggcc aatttgttct gtcaggctag 
003241 accagcttaa taagtgggtc ccattttgtt cttcttatgg tatgcagaca ctcaagagca 
003301 attagggcat tgttagtaat aagacaccct ggtacaaaag cactttgata atcaaacaca 
003361 tcattcagaa agattttaag tcggtttgct agtacctttg aagcaatttt gtacagcacg 
003421 ttacacaaac tgatgggcgg aaattggtta ggagatcagg ctttgacact tttaggataa 
003481 atacatttat attgtcacaa acccctcagg gacctccgca ccatttagct gcgaaccaca 
003541 tcactaatct catctccaat aatctcccag tgtgtctgat agaacaatgc tgggaatcca 
003601 tcagtacctg ttccagcctt tgtgggatcc atctggaaaa gagccctcct aatctcatca 
003661 tttttgttct gggtacagat tagaagttta gtttgtgcag gagtcctaaa cttttagata 
003721 atagatcctt aaaaatatat tttatttgca cgatttagtt tattgaccta acccaaaacc 
003781 cctgaaagac ataagtgatt cctgttttag ttttttcctg cagatttctt gtatgcttct 
003841 tgtcactgaa atttgaacta cgtttctcct gcactttttg aaaggctttg ttactcgcta 
003901 cattcttaac atgattgtcg aatttctaat tttatggttg caaaagaatc atacctagtt 
003961 accaacagca aggcagtttg attacatttc tgttgaaaca aattggtttc aacacacagc 
004021 cattgccctg acctttacat atagaaggca cttgattgga taatatgtac agccattatt 
004081 tgtctgtgtt gaacttatca aaaatttatt tgtagagcat ttgatgagtg cttcttttgg 
004141 tgcagcctga atttttcatg ttgatacttt tggtcctagt gtatctaagt ttaacccttc 
004201 cattattgta ctcctctctg agcttttcag gtaggatagt aactgactca gactatttcc 
004261 ataacaaaaa gcatatatgg cctgaagggt atactgcttt caggaagttc agatcagtga 
004321 aaggtagtta tctgtttgag aattttgttg tcaagcttat agcaaatgta ataaaccatt 
004381 gttaaattca cttcagtagt ttcagaatca gtacattatt attgttgcag atccacatgt 
004441 agtaatactt tacaaaatgg aggtactgag gaattcagat ataaaagctc ggccattgtt 
004501 tagggtcaca tcagaagatg gaacacaggt aagcagttta acaattttac tgattttttt 
004561 ttaccattga aaacatgtgt tttagttgaa ttttaccttt tcagaatata gtttatcatg 
004621 agatattgta tcatcgatat gtttggaatg attatcgtaa actgaaaaca catactctat 
004681 tgacatttat tatcaatcta attgtcttat cacagttgag attgctggtt gtctcacact 
004741 ctcacttgct taagttcagt ctttccattt gatgaaatat ctagaatcaa atgtcattgt 
004801 gtatctgatg tgatggaaat gtttcgaatt ttaataatga gcttttaaag gtgttgttgt 
004861 aattaaatgg acttcatact ccagtaatta ctgaccgtcc tatcattcct ggttgcgtca 
004921 tcttctcgct tgattgttgt caccattttt atccaaaatc agcaatatgt atgtgcattg 
004981 caatgaatca caaccaagta tgctattagt ctaatatata aaatgcaata aataatttat 
005041 tatcttcaaa tataaactgt atatacatga tatatgcgaa tgagactgat taaccacctg 
005101 tacatactca tctccaacag agatacaata tttttctatt aatttctttg aatagcacat 
005161 aaatggctgc ataattgtag ccaacgatct ggagggcgaa cgggtgcaag acataaccat 
005221 aagcccccag ctccgtctat taaacaatga gatattcttg taggaatagg catttgaata 
005281 agtgattatt tgatctcata tgtttccata tgtctagtat caattattac atttccagaa 
005341 tggcatatag aatcttttct tgtattttca aaccagttgg gttacatatc actatcagtt 
005401 atcactagtt atttcatgga aaaggagcaa tttgtgagga tgaccagcaa gtatctcttt 
005461 gtatgtatgt gtacaaattt attttgaact ctgtacgttg tcttgatcta atgcattctg 
005521 atgaccagat tgatggctct accccaaata catgttggaa ggagatatat tgtagattaa 
005581 aggaaaaaca gcgcaatgtg gcctctggat tggacagaga tgtttgtcag ggatctggtt 
005641 cctatatgtt tggcttttca aatccacaaa tacggcaact tattcaggtt tttgaacaaa 
005701 taactcttca agttttagtt tttcttttgt tttggtagtg cattggtgat ggacaatcaa 
005761 atcaattctt tttaaccata gtgtcttttt atactatttt ctgtctgaaa acttccttat 
005821 atctgcataa tcatctaaag ccttttgtca ttggtatttc atttcattac cattcatgtt 
005881 tttgtagtga attcgtgcag actaagagtt tatatgtttt tatgaatgta tgattgtctg 
005941 atggttgtat agttctactg tcaagctatt ggtttctgga agtttatcaa agagaaaaaa 
006001 aggtttcatg ataattgcta gtgcccctgc actgtctgca gtgtgttgtg ctatgtctga 
006061 ttgtttggtg atacttgcct ttgtttccca tattgacatt tttatgccta gaaatgcatt 
006121 ccattccttt ttaaaaacta attcaactgt gtattttagg agttacccaa tgcaaggtca 
006181 tgcttaaagt attttgaaaa tgctggagac acctttcgtg ggtatagagc tgttcatgta 
006241 aattggaaag atctagacta ttgtagtgtt tgtgatatgg atgaggtaaa tgatctttac 
006301 tctgttctca tacataagct attcaaaggg tgaataacca aatggattat tatttatact 
006361 cttttgaatt gcaggaatac gaagacaatt tgttcttgca atgtgataag tgccgtatga 
006421 tggtaggcat gctttcattg actagctcct tgaagatgtt aaatatggag ttgtttacat 
006481 aagtgttaaa catgatacag gtacatgcta gatgctatgg tgaactcgaa ccattgaatg 
006541 gagtcctttg gctttgcaac ctgtgtcgac ctgaggcgcc tcgtgtttct ccacgatgct 
006601 gtctttgtcc agtaacaggt atagaatcat gttgcagttt cttgcataac aaggctataa 
006661 acttatgtga tgattccctt tatttagggg gcgcaatgaa accaacaaca gatggtcgtt 
006721 gggctcatct tgcatgtgct atatggattc ctggtataat gacttttatt gatccacata 
006781 tcttagtgat gttttgccag gacatgcttt taattatatt aatcctaact ttggtacaga 
006841 aacttgctta aaagatgtga agagaatgga accgattgat ggattgagca gaatcaacaa 
006901 ggttcatttt tcctttctgc tgttgatttt ggtgtgatcc tatttttgtc agagtgtcac 
006961 tgatgttgtc tatgcaggac cgctggaaac ttctatgcag catttgcgga gttgcttatg 
007021 gagcttgcat acaggtactt ttgcaaccgt ttttaaacct gtgattgggt catcataaca 
007081 tattatttgc tcatttcctt ttctttcctt gaaagagatc atgatacttt tccttcctca 
007141 atatagtgtt ctcatcctac ctgtcgtgtt gcatatcacc ctctttgtgc acgtgctgct 
007201 gatctttgtg ttgaggtatc ctcttgatct ttatgatgtg gcatattatt tactcctact 
007261 ccctcccaaa ataagtgcgc tcttctagtt caaatttgaa ctagaggggt gctattttgg 
007321 gacggagggg gtacttgata acttattctg tttcctaatt aagtatttgt attcatgtgc 
007381 aaccattttg ttaattttag cttgaagatg atgacaaaat ccacctcatg ttacttgatg 
007441 aggatgagga cccatgtatt cgtctacttt catactgcaa gaagcacaga caaccatcga 
007501 ctgaacgtcc atctcttgaa agtaaccttg ctaagcctgc tgtggtagtt cagacagatg 
007561 cagttccacc atccggttgt gcaaggactg gtaagagagc aaatgtttac ttgaggctaa 
007621 gagcaagttt tgtcaagttt tctgcataat aaatttggtt gtttatttaa agtatccatt 
007681 tttttttctg ctatttgtgt ttgacaatta atccttgcaa tcttatggga ttgagctaat 
007741 tagttatgca aatgctgtat tgtttatcct ctactacata aaagaaccta gtagttgtgg 
007801 tggtagtgag tctgccagtg ccatctcacc atggcctcta gagttggtgg gatctttcta 
007861 agcgtggata aatagatctt ttgtgcactt tgtttggcta tctgtgtatt gttgtttgct 
007921 tgcagatcat atatgttttt ccatgagaaa tatgtatagc ttttttagtt ttaaactttt 
007981 gatgtatttt tttaaaaaaa aatccgttcc aacacgagca ttttgctagt ttaagcatat 
008041 attttcctgc ttttgttatt gcacaaccag ttctctgatc atgtttcatt tctccattac 
008101 ttgccttcct tttcagaacc ttataatatc catgggagaa ggggccaaaa gcaacctcaa 
008161 gttatggcta ccgcttctgt aaaacgttta tatgtagaga atatgcctta tattgttagt 
008221 ggtttctgcc aaaatagagt aggccatgat gctatcagtg aaccaattca atcagttggc 
008281 tttttggatg ttgcacatca agaagctgtt ggcaacgtgt cttctatgat tgaaaagtat 
008341 aaaagcatga aggctacatt caggaggaga ctagcttttg gtaagtccat taatctgtac 
008401 cagtagcatc tccatggaat tatcgttttt gtggactgaa aatagaacta tcattttatg 
008461 ttgtaaagct gaccaaatcc ttaacattgt tgcaataata ataatgcttt cagg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV833427 bags8j13 487
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ728597 whvs20o18 630
more... (Total Hit Count: 2 )
/rice/oryzabase