cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK064780     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0482100 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 19,220,775 -  19,224,315  ( - );   3,541(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 19,220,775 -  19,222,509 ( - );   1,735 (bp)
Exon 2 Location 19,223,243 -  19,223,665 ( - );   423 (bp)
Exon 3 Location 19,224,065 -  19,224,315 ( - );   251 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os09g0482100 Os09t0482100-01 J013000B06 200018 J013000B06 18 LOC_Os09g30412.1 AK064780 AP008215.2 255678666 BAF25414.1 113631733 NC_008402.2 297610002 NM_001070035.1 115479812 NP_001063500.1 115479813 Q69QQ6 HSP82_ORYSJ


Chromosome: 9 ,  position: 19,220,775 - 19,224,315 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctctcaaaac cctctcctaa ccctagccgc cgccgcagcc gcagccgcag ccgcgcgtcg 
000061 tctcctccgc ccgcgagctc ctcttcccgc cggcgagaga tcaggagcac gcaaggcgcg 
000121 cggccatggc gtcggagacc gagacgttcg ccttccaggc cgagatcaac cagctgctgt 
000181 ccctcatcat caacaccttc tactccaaca aggagatctt cctccgcgag ctcatctcca 
000241 actcctccga tgtaagtttg cgccgccccc gaaattaatc ccctctcgtc gaggaatcga 
000301 aatcggtgct tgcttatgtg ctctttgctg ttgttgtacg cgtcgatctg tgagcgtgac 
000361 ggcatctgag gatcatatac tgatagggcg tagacctgtt tcaaatcaat gaggtgtgag 
000421 cgttgactcg tgatttgtag agtttgtgct agtttatttg tttgttttac tcatcgaaat 
000481 gtgaatatgg ccacatctga gcactagcat aaacttgtta caaatcagcg agggttgtgt 
000541 gtttacccgt gcgtgtaatc tgtatagtgt ggtagtgtgc tgatgctttt acagatctgt 
000601 gtgtttgggt gatgaattcg atgtgacatg ggtgtgtgtg gtttctgcag gcattggata 
000661 agattaggtt cgagagcctc acggacaaga gcaagctcga tgcgcagccg gagctgttca 
000721 tccacattgt ccccgacaag gctagcaaca ccctgtcgat catcgacagt ggtgtcggca 
000781 tgaccaagtc ggacctcgtc aacaacctcg gtaccatcgc caggtcgggg accaaggagt 
000841 tcatggaggc gctcgctgct ggtgctgatg tgtccatgat tgggcagttt ggtgtcgggt 
000901 tctactccgc ctaccttgtt gctgagaggg ttgttgtgac caccaagcac aacgacgacg 
000961 agcagtatgt gtgggagtca caggccggtg ggtccttcac tgttacacgt gatacctctg 
001021 gtgagcagct tggacggggt actaagatca ccctctacct caaggatgat caggtataag 
001081 attcagcaca tttctcttgt gaattcctat tacttgtgtg atatatgttg ctgtccatgt 
001141 gatgtttttt ttgtcagaac tttagatgtt ctgtacatat gacaattgga tgagttcggg 
001201 cctgtatggt tgagttggca tgctaccagt gtacatgatc tttcttgact gttagcatgt 
001261 tctgaagaaa tattcttgct actttaataa gaggttgtct tgatgacatg gtgctcattt 
001321 tgtagtacaa taaatgaact gtatagatta ggggtgtaca gcagtttttg gaatagtggt 
001381 atcttgttct cttggttaca tttactgaaa atcaacattg ctgataaacc gtaattctga 
001441 actagtgata tgggtttctt tggtagtaat cacttaatta aacaatagta ttagttgtaa 
001501 caatatatat ttggtgtagt atacatctta ctgttttccg ttaacatgaa atgaattttg 
001561 agatttactg ctttcagctt gtctttctgt tcttttgtgc tgtagttgtg acttccttgt 
001621 atgctacatt gttatgatct gtgactcttt tgttgtattc tgcaaatcag tttatatatt 
001681 gtttgttcca atgttcttat cagaatgcat aatggcataa caccttgttc caataattag 
001741 ctgtatcgtt ttttttgttc ttattgtttg ttgtttataa taaactgttg caatttttac 
001801 ttgcagctgg aataccttga ggaacgtcgc ctcaaggatc tggtgaagaa gcattctgag 
001861 ttcatcagct accctatctc cttatggact gagaagacaa ccgagaagga gatttctgat 
001921 gatgaagacg aggaagagaa gaaggatgct gaggagggaa aggttgagga tgttgatgag 
001981 gagaaggaag agaaagagaa gaaaaagaag aagatcaagg aagtctctca tgagtggaac 
002041 gtgatgaaca agcagaaacc tatttggttg aggaagccag aggagatcac caaggaagag 
002101 tatgctgctt tctacaagag cttgacaaac gactgggagg aacatctggc tgtcaagcac 
002161 ttctctgtgg agggtcagct tgaattcaag gccatcctgt ttgtaccaaa gagagcgcca 
002221 tttgacctct ttgacaccag gaagaagcaa aacaacatca agctgtacgt acgccgggtg 
002281 tttatcatgg acaactgtga ggagttgatc ccagagtggc tcagctttgt caagggcatt 
002341 gttgattctg aagaccttcc cctcaacatc tcacgtgaga tgctccagca gaacaagatc 
002401 ctgaaggtga tccgcaagaa ccttgtgaag aagtgcgtgg agctcttctt tgagatcgct 
002461 gagaacaagg aagactacaa caagttctac gaggccttct ccaagaatct caagcttggc 
002521 atccatgagg actccaccaa caggaccaag attgctgagc tcctgaggta tcactccacc 
002581 aagagtggtg atgagttgac cagcctcaag gactacgtaa cccggatgaa ggagggccag 
002641 agtgagatct attacatcac tggtgagagc aagaaggctg ttgagaactc ccccttcctt 
002701 gagaagctga agaagaaggg atatgaggtc ctgtacatgg ttgatgccat tgatgagtac 
002761 gctgttggtc agcttaagga gtttgagggc aagaagctcg tctctgccac caaggaaggt 
002821 ctgaagcttg atgagagtga ggacgagaag aagcggcagg aggaactcaa ggagaagttc 
002881 gagggtctgt gcaaggtgat caaggaggtg ctcggtgaca aggtggagaa ggttgttgtc 
002941 tctgaccgtg tggtggactc tccctgctgt ctagtcactg gggagtatgg ctggactgct 
003001 aacatggaga ggatcatgaa ggcccaggct ctgagggact ccagcatggc cggctacatg 
003061 tcgagcaaga agaccatgga gatcaacccg gagaattcca tcatggacga gctccgcaag 
003121 cgtgccgatg ctgacaagaa cgacaagtct gtgaaggacc tggtgatgct gctcttcgag 
003181 actgccctcc tgacctccgg cttcagcctt gaggacccca acaccttcgg caccaggatc 
003241 caccggatgc tcaagctcgg cctgagcatc gacgaggacg agtctgctga ggctgacgcc 
003301 gacatgccgc cgctggagga cgacgccggc gagagcaaga tggaggaggt cgactaagcg 
003361 ccatggttgt cattcggccc ccatctcctg gagccctagt tctctatagc tttatctgac 
003421 tctgtgctct tcgccatttt tgctatgctg gatgtatcgg tattgccgta tcttagcgcc 
003481 tgaacatttc gtggtatttg ctcaaacagt tacgttttaa atttaaatat gctagttaat 
003541 t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252673 FLbaf165p12 2419
more... (Total Hit Count: 331 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ678737 whok13m08 811
more... (Total Hit Count: 1888 )
/rice/oryzabase