cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK063988     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0457400 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 17,994,992 -  17,997,251  ( + ) ;   2,260(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 17,994,992 -  17,995,233 ( + ) ;   242 (bp)
Exon 2 Location 17,995,360 -  17,995,490 ( + ) ;   131 (bp)
Exon 3 Location 17,995,900 -  17,996,707 ( + ) ;   808 (bp)
Exon 4 Location 17,996,798 -  17,997,251 ( + ) ;   454 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os09g0457400 Os09t0457400-01 107016 001124D12 11299 LOC_Os09g28400.1 AK063988 4150 AP008215.2 255678666 BAF25281.1 113631600 NC_008402.2 297610002 NM_001069902.1 115479546 NP_001063367.1 115479547 P27932 AMY3A_ORYSJ


Chromosome: 9 ,  position: 17,994,992 - 17,997,251 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acgcagcaag agccgatcga tcattgtcca agtctccaag cgatcagcta gctgacttga 
000061 cgacgctgcg agcagcggca gcaagagagc agcagcacaa agggttcccc tttcacaagt 
000121 gtccggccgg ctgcacgtag gccatgggga agcaaatggc cgccctgtgt ggctttctcc 
000181 tcgtggcgtt gctctggctc acgcccgacg tcgcgcacgc gcagacgcag atcctcttcc 
000241 aggtgcttta ttcatttcac ccataaacgg gcaagggggt tcacctgtgt aaaattatcg 
000301 acagcaagtc agaacggcta atataattca cgtacaaccg aatacgtgtc tgtaacattt 
000361 ttgtgcaggg ttttaactgg gactcgtgga agaagcaggg tggttggtac aacatgctca 
000421 aggaccaggt gggcgacatc gccagcgccg gcgtcacgca cgtctggctc ccacctccca 
000481 cgcactccgt ctcgcctcaa ggccagcaag ccatgcatct ccttcatctc gttacgcttc 
000541 tctttgtagc atgtccgttt ctaaatattt gacaccattg actttttagc atatgtttaa 
000601 ccgtttactt tatttaaatt tttttgtgaa atatgtaaca ctatatgtat acatataagt 
000661 atatttaaca ataaattaaa tgataggaaa agaattaata attatttaaa ttttttaaat 
000721 aagatgaacg gtcgaacata tttaaaaata taacggtatg aaatatttag aaagggaggg 
000781 agtatattac gtgacgtaaa gtgtgttacg gccagtgtct tactgcaatt atcagctgat 
000841 ctagctcatc aggcaattga catgtatgca tgcatgtgtt taaatcgatt tttcccgtgc 
000901 atgcacgcag gctacatgcc gggacggctc tacgacctga acgcgtccaa gtacggcacc 
000961 aaggcggagc tcaagtcgct catcgccgcc ttccacgcca agggcatcaa gtgcgtcgcg 
001021 gacatcgtcg tcaaccaccg ctgcgccgac gacaaggacg gccgcggcgt ctactgcatc 
001081 ttcaagggcg gcggcccgcg cggctgcctg gactggggcc cctccatgat ctgctgcgac 
001141 gacacgcagt actccgacgg cacgggccac cgcgacaccg gcgccgactt cgccgcggcg 
001201 cccgatatcg accacctcaa cccgctcgtc cagcgggagc tctccgactg gctcaggtgg 
001261 ctcaggaggg atgtcggctt cgacggctgg cgcctcgact tcgccaaggg ctactcggcg 
001321 gccgtcgcca ggacgtatgt ccagaacgcc aggccgagct tcgtcgtggc ggagatatgg 
001381 aactccctga gctacgacgg cgacgggaag ccggcggcca accaggacgg ccagcggcag 
001441 gagctcgtga actgggtgaa gcaggttggc ggcccggcga cggcgttcga cttcacgacc 
001501 aagggcatcc tgcagtcggc ggtgcagggc gagctgtggc ggatgcggga caaggacggc 
001561 aaggcgccgg gcatgatagg ctggtatccc gagaaggccg tcaccttcgt cgacaaccac 
001621 gacaccggct cgacgcagcg gatgtggcca ttcccgtctg acaaggtcat tctgggctac 
001681 gcctacatcc tcacccaccc aggagtacca tgcatcgtac gcaattaact tctcaaagct 
001741 tgttataaca tccatggatc gatgcttcat cattcatagg tgacaatttt gttttgtgtt 
001801 gtttagttct acgaccacgt gttcgactgg aacctcaagc aagagatcaa cgcgctggcg 
001861 gcgacgagga agcgcaacgg gataaacgcc gggagcaagc tgcgcgtcct ggcggcggag 
001921 agcgacatgt acgtggcgat ggtcgacgag agggtcatca ccaagatcgg gccgagaata 
001981 gacgtgggca acataatccc gtcggacttc cacatcgtgg ctcatggcaa tgactactgc 
002041 gtctgggaga agagcggcct tagagtccca gaaccagaag gtcggcgcta gaaacggctc 
002101 gcaagctagc tacacagttc ttaataactt ggtcgcaaaa aaaaagttct taataatttg 
002161 tacgagaaat gttcgtttct gtttgcatat atagcttatg aaatcttacc aatatatact 
002221 gctctgtttt ctatagttca tcccggaaat ttgaacttgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV834958 bah20k14 603
more... (Total Hit Count: 9 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ901102 whthkles24j05 689
more... (Total Hit Count: 16 )
/rice/oryzabase