cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK060270     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os09g0298200 ( IRGSP 1.0 )
RAP - Chromosome No. 9
RAP - Location, Length 7,863,593 -  7,867,770  ( - );   4,178(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,863,593 -  7,863,715 ( - );   123 (bp)
Exon 2 Location 7,863,924 -  7,864,067 ( - );   144 (bp)
Exon 3 Location 7,864,563 -  7,864,682 ( - );   120 (bp)
Exon 4 Location 7,864,756 -  7,864,854 ( - );   99 (bp)
Exon 5 Location 7,865,034 -  7,865,145 ( - );   112 (bp)
Exon 6 Location 7,865,246 -  7,865,349 ( - );   104 (bp)
Exon 7 Location 7,865,529 -  7,865,708 ( - );   180 (bp)
Exon 8 Location 7,865,799 -  7,866,068 ( - );   270 (bp)
Exon 9 Location 7,866,552 -  7,866,848 ( - );   297 (bp)
Exon 10 Location 7,867,471 -  7,867,770 ( - );   300 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os09g0298200 Os09t0298200-02 102494 001005E09 6864 LOC_Os09g12660.1 AK060270 34837 AK060270.1 32970288 BAG87387.1 215765690 NC_008402.2 297610002 NM_001069343.1 115478425 NP_001062808.1 115478426
Os09g0298200 Os09t0298200-02 102494 001005E09 6864 LOC_Os09g12660.2 AK060270 34837 AK060270.1 32970288 BAG87387.1 215765690 NC_008402.2 297610002 NM_001069343.1 115478425 NP_001062808.1 115478426


Chromosome: 9 ,  position: 7,863,593 - 7,867,770 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gaaaaaaaga gggaactttt cacggccgct gaagcctctg acactccact gtagtgtgtc 
000061 agtactccgg ccacctctct cggccgttgc tctcccatgg cgatgatggc gatgggcgcg 
000121 gcgtcctggg ccccgatccc ggcgccggcg agggcggcgg ccgcattcta tcccggccgc 
000181 gatcttgcgg cggcgaggcg gcggcgtggg gcggcggcga ggaggccgtt cgtgttcacg 
000241 ccgcgtgccg tgtcggactc ccggagctcg cagacgtgcc tcgatccgga cgccagcacg 
000301 gtacgccgcg atctcgccgc cggtgcccaa aaaaattcta ctcttccagc gctcgctttt 
000361 ttctttgcgt tcacgaggga gaaaagttcg gatccttttg ggttgggaaa atcgaagggt 
000421 cgttcttggg attcgatgtg ttgcggttat tttactcgac acatttggat gagcgaaatg 
000481 tgtttgatat gtttcttgtg gggattcctg cgagtgcgaa gtgtttgttt ttttagagtg 
000541 ttttggtgtc gatttctcgg tgattctatc agctgttgcg ttcagtactc tctgtgattc 
000601 aagaaacggt ggaaagatga tggtgacagt atctctagtt tagttgttgg atgaaatatt 
000661 gacatatctt taacggtgga aaggtgattg ttagtgagaa ccccataata attaattagt 
000721 ggaggatcta tcgtggtcca tggcttgaat ttaataattg gctccagatc tgttgtagta 
000781 cttttgagtt tataatttat tagattctgt ggtagaacta gaagtacaga acttggaact 
000841 caagagcatt tcatctgtta tctatatata gtctgatgat gatttgtatt attattttta 
000901 catccaattt ttaatcctgc agagtgttct tgggatcatc cttggaggtg gtgctgggac 
000961 aaggctgtat ccgctgacaa agaagagggc gaagccggcg gtgccgttgg gtgctaatta 
001021 caggctcata gatatcccgg tcagcaactg tctgaacagc aatgtgtcga agatctatgt 
001081 cctgacacag ttcaactccg cgtcgctcaa tcgtcacctc tcgagggcct atggaaacaa 
001141 cattggtggt tacaagaacg aggggtttgt tgaagttctt gctgcgcagc agagcccaga 
001201 gaatcctaac tggtttcagg tatcttggtt aatctgtatt aacttgccaa attttttata 
001261 gtagtactgt attagtttga attgactcgg taagtggtaa tttttgtact atgcaggtac 
001321 tggatgtttc tgcttctgtg tattattgaa tggtctcgtt tagctgcaaa gatgcatgaa 
001381 tgccagttaa agtttatact ttatagggta caaagaaaag aaggggatac ataattaata 
001441 tgaacataca ccctgtttta cggaacaaaa gaaatattag ggttaatgta ctcctgttga 
001501 ttcactcttc catattttct cacatttata gttaagtgaa actgttcact agtttagatg 
001561 ttccaatgat ttctttggaa ttgcaaacta gagttaacat tgatagatga gctcttaggt 
001621 taccaacttt catgttatat ggtttctgta tgacaatacc ttaaggacgc tgcctaattt 
001681 attttgtttc tttctgtctc agggtactgc agatgctgtg cgacaatact tatggctatt 
001741 tgaggaacac aatgttatgg agtttctcat tttggctgga gatcacctgt accgtatgga 
001801 ctaccaaaag ttcattcagg cccacagaga aacaaatgct gatataaccg ttgctgcgct 
001861 gcccatggat gaagaacgtg ctacagcatt tggccttatg aagattgatg atgaagggag 
001921 gatcattgaa tttgcagaaa agccaaaagg agagaagttg aaatcaatga tggtaattga 
001981 tgagtcatcc gttgagacca tatgcaacct gatctgttga agcatacatt tcagtgattg 
002041 tctgcatgtt ttgatcttgc aggttgacac taccatactt ggccttgata ctgagagggc 
002101 aaaggaattg ccttacattg ctagtatggg aatctatgtt tttagcaaag atgtgatgct 
002161 taagcttctc cgtcaaaatt tccctgctgc aaatgacttt ggaagcgagg ttattcctgg 
002221 agcaacagaa attggaatga gggtacgcta tgctcttgaa acttgtagca tgtagggaat 
002281 ttttatcctt ctctcagttc atgctgtagg ttttgtgaag tttggtatgt aaactgcagt 
002341 tacatcattt attgtgaaat gttacttctt tacttaattt ttactttgca tgtttgctta 
002401 tgctgctaat gtatttgata ggtgcaagct tacttatatg atggttactg ggaagatatt 
002461 ggtactatag aggcattcta caatgccaac ttggggataa ccaagaaacc tgtgccagat 
002521 tttaggtaag gtttacattt tgcatggtga aaacaagtta cttttaaaag ggtgcatttc 
002581 tgctgaattt tcttcctatt tttgagcaaa cattattgtg tgcagcttct atgaccgttc 
002641 tgccgcaatt tatacgcaac ctcgatactt gcctccatca aaagttcttg atgctgatgt 
002701 gacagacagt gttattggtg aaggttgtgt tattagagta agtatccttt tcagatgaat 
002761 tatcatagcg cttccttcta tgatctgtgg atagtattag atcataacat attaggacct 
002821 tgagttatta cttgttagtc gaacatttct ttttcattgc ttcaaaacag agaccctaaa 
002881 tttgttgaca tgcctttccc cctttatttt ggctagcatt gcacaatcaa ccattctgtg 
002941 gttggactcc ggtcctgtat atctgaaggc gcagtgatag aggactctct gctaatgggt 
003001 gcagactatt atgaggtaaa ataaaacaaa actatactat attatggtgt attggtgttg 
003061 tgggaactta attgtgcttt ttgttcagac ggagacggac aagaaagccc tttctgagac 
003121 tggtggcatt cccattggta ttggaaagaa tgcacacatc agaaaagcaa taattgacaa 
003181 gaatgctcgt attggagaaa atgttaaggt atttcatata tatttatact tttggttgtc 
003241 aatctgatga agtgtgcctt ctgtattaac tgatcaacta ttcattactt gaaagaaaag 
003301 agagggacaa gcatatttgt ttgaatacaa acttggtact ttctcatgct ttttgttaaa 
003361 ggtggccttt tgcaaatgtg catcttgcat cactggtttg aaagcccttt atcattaaaa 
003421 aatactacta tgtcatcata ctttttcccc ctaaattatc tttcttttca aatgctatat 
003481 gtcttttctt gccatgggtt tttgccttgt tgagtatgga tctttaatta tttacttact 
003541 aagcacaaac tgaaaaaatc caggcaaccc atatggatcg atttacatat tgtttctctc 
003601 acttttccag agatgaccag ttgatactga actgaacaaa atgatgtgca atgtttattg 
003661 cattaattaa tgatcaatct tatatgatct gttgcttgta cagataatca atgtcgacaa 
003721 tatccaagaa gcttcaaggg agactgatgg atacttcatc aaaagtggca ttgtcactgt 
003781 gatcaaggac gccttaatcc ctagcggaac agtcatataa aggcaaccaa tcaccactgt 
003841 acataaggtt ctctcaaatt ctcatattta ttctatttag agcgtttgga catcaccaat 
003901 tcaccatgaa atgggaagcg tcttttattt tccctcttac aaacaatttc taccaaaatt 
003961 ggatcgactg ccttgcttaa tgctagaatt tgcttagtag ctggtaagcc tcatatttat 
004021 gcttaaataa gtgattcttt tgttctgtaa tgcaggttgg gccttgcagc atatggtgat 
004081 ctgatctcca gtgcacatca agcaatcaac ttttaacgct gtggtttatt ccatgctgcc 
004141 agttcaccaa gctctgcatc aacttgcaag gatatcat

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK253094 FLbaf141n20 2122
more... (Total Hit Count: 21 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ233198 whe3l05 661
more... (Total Hit Count: 119 )
/rice/oryzabase