cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK102472     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0580500 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 24,120,176 -  24,121,647  ( + ) ;   1,472(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,120,176 -  24,120,405 ( + ) ;   230 (bp)
Exon 2 Location 24,120,695 -  24,121,647 ( + ) ;   953 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0580500 Os01t0580500-01 J033094H01 213320 J033094H01 14859 LOC_Os01g39860.1 AK102472 1835 AP008207.2 255672756 BAF05322.1 113532939 NC_008394.4 297598437 NM_001049943.1 115437899 NP_001043408.1 115437900


Chromosome: 1 ,  position: 24,120,176 - 24,121,647 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actcgctcat cggaagcaaa tcatcttcct agtgcataca agttagctca tcatcagcac 
000061 tagtacagta ctactagaca gttgtacgta caagtagaag tagctaccca accttgggag 
000121 agatggagat tccagtgatt gatctcaagg ggctcgccgg cggcgacgaa gaaagggagc 
000181 gcaccatggc ccagctccac gaggcctgta aggactgggg cttcttctgg gtacgtgaca 
000241 acacttcaga gattatttga gagtggaaca gttttgagca ccactgtttt tttagcaatg 
000301 caaaatcgaa caggtctaaa tgtaacatgt tagcaaagta cttgaaatta taaatgtagt 
000361 agtacaactt tgatgctaaa taattagatt atattttttt taaaaaaaac tgttggtcag 
000421 attttgattc ttcaaatgtg aaaactgaca aatgtgtacc tctatgttgg ctgtcgcaaa 
000481 attaattctg cttcggtgaa atgctcgcta cgaatgcagg tggaaaacca tggcgtggag 
000541 gcggcgttaa tggaggaggt gaagagcttc gtgtaccgcc attacgacga gcacctggag 
000601 aagaaattct acgcctccga cctcgccaag aacctccacc tgaacaagga cgacggcgac 
000661 gtcctcgtcg acggcggcga cctcgccgac caggccgact gggaggccac ctacttcatc 
000721 cagcaccgcc ccaagaacac cgccgccgac ttcccggaca tcccgccggc ggcgagggag 
000781 tccctggacg cgtacatcgc gcaggcggtg tccctcgccg agctgctcgc cggctgcatc 
000841 agcaccaacc tgggcctcgc cggcgccgcc ggcgtcgtgg acgccttcgc gccgccgttc 
000901 gtcggcacca agttcgccat gtacccaccg tgcccgcgcc cggacctcgt ctggggcctc 
000961 cgcgcccaca ccgacgccgg cggcatcatc ctgctcctcc aggacgacgc cgtcggcggg 
001021 ctcgagttcc accgcggcgg ccgcgagtgg gtccccgtcg gcccgacccg gcgcggccgg 
001081 ctgttcgtca acatcggcga ccaggtggag gtgctcagcg gcggcgccta caagagcgtc 
001141 gtgcaccgcg tcgccgccgg cgccgagggc cgccgcctgt ccgtcgccac gttctacaac 
001201 cccgggcccg acgccgtgat cgcgccggcg acggcggcgg cgccgtaccc cgggccgtac 
001261 aggtacggcg actacctgga ctactaccag ggcaccaagt tcggcgacaa gaccgctagg 
001321 ttccaggccg tcaagaagct cttcagctga ttaagcactt ggggattata ttttgttgtg 
001381 atgtgattaa aatcgcgtgc gctaatcggg gtttgtaact ttgtatactt gtttggtttg 
001441 aatcaatcgt cgtgtagtac gcagggttcc cc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY867430 rbart29f01 478
more... (Total Hit Count: 25 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ700310 whsd1h23 674
more... (Total Hit Count: 8 )
/rice/oryzabase