cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK243577     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0205400 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 6,158,128 -  6,160,388  ( + ) ;   2,261(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 6,158,128 -  6,158,204 ( + ) ;   77 (bp)
Exon 2 Location 6,159,023 -  6,159,098 ( + ) ;   76 (bp)
Exon 3 Location 6,159,991 -  6,160,388 ( + ) ;   398 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 MSU ID cDNA
Accession No		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os08g0205400 Os08t0205400-01 J100082I23 302938 J100082I23 LOC_Os08g10480.1 AK243577 AK243577.1 116012942 BAH01657.1 215769428 NC_008401.2 297609017 NM_001067769.2 297608140 NP_001061234.1 115475275


Chromosome: 8 ,  position: 6,158,128 - 6,160,388 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gccaccggag ttccccccac caccgctcgc cgccttctcc gcctcgcctc gccgccgcgt 
000061 cgaccgccat ggctgaggta cggccccgcg acagaactcc ttgtttattc gtttggtgtt 
000121 aggggcgcgg tcccttcctg cggtcctgga gagagaagag agagagagag agagagagag 
000181 agagagagag agagagagag agagagagga gagggttgat cgataggggt agatggggag 
000241 gccaagagag gaggattcct cttttttttt tttggcgtcg agttgtttga atatggggga 
000301 agaagcgtgt tcttttagct tgcgtgtggg gttaattagg gatctgatta tgatctgatg 
000361 attggccggc gcgctgatcg atcagcttgc ttgttcttgc gcgtgcttgt cttggctttc 
000421 cttcatcgtg cttgcaggcc agggtatgac ttggggatga tgttttgggc gaaatcttgc 
000481 taggagggcg gtataccttt cagagtttca gtagttcaaa caccaactga tggacaagtt 
000541 ttagaacttc atggtggggg tcgaaactag cttgatgatt ttgatttgtg tacgttcttg 
000601 ttgaaacgag tacagattgc ggagtaggcc cgattggata gttgttgtac ctaccttaaa 
000661 tgagccatct tgttggttat ggtctgtgag ttcaatgata gagcatgatt gtccccatct 
000721 gattattact agttcccttc cagaatgaag cataaattca tttaattgtt gtcggttaca 
000781 gtaaatcttg attgggaatt atgatgtatt ccgagtacca tgtggcgtgt gcgaagatgt 
000841 gattgaggac gaatgaggac ttagctgatc cttgctattt ttgtctattg tgcagactgt 
000901 tgtgctcagg gttgggatgt cctgtgaagg ttgtgttgga gctgttaagc gggtactggg 
000961 aaagatgcaa ggttagttta gctctgtcct cagcgttctg tttgttgaga actttttcct 
001021 ttttgcgagc aatttttaca atgtaacgcg tgcaatgcaa cattggactt aacttatgcc 
001081 aatgctgaat ctgaaccaat cctggtatat ctctgcaatt ggtatctcct ctttaaaaat 
001141 tcccttaact gtatgctttt gacgaacact ggataatttt gattgggtga aatcttgtgc 
001201 aatttctagt ttcaaattgt acctgcgtct gatttctagg cataaagata ttgttttgta 
001261 atattgcttt cgattgtatt ttggactcat actttggcaa ttatgtacct ttctgtcact 
001321 accatgacac tcaccacttg tgtaagtggc aatgtccata gacaaaagga aattaaggta 
001381 tccggagtgc agacgcaaac aagttaggca acaactttag tattcaaatg agaatttata 
001441 gctgtatttg cttgttttgc tggtattata aataaaattt tgagctctgt tgttaatgat 
001501 tgctatttga aattatccac aactatagag tatagtgggc aaacatataa tttcgaattt 
001561 ctctcctgca tgctatttat aaattcaatt aatttttaat caaattgaaa gaatggttgg 
001621 taaaaaggaa aactacatgt gcttcatctt tggcacattt tggtccaagg cagttgcttg 
001681 aataatgcta aggctatctt tcaaacccaa cctctgcaat cagccctaat gacttccaat 
001741 attctgcatt agatcatgga agcacaaatg attatttata cttgcatatg tattcttgta 
001801 agtgtcactg caatatttag cgcatcgatc taaacatctg agttggactt gtggttgctt 
001861 caggagtgga gtcctttgac gtagacatca aggagcagaa ggtcactgtc aagggaaatg 
001921 ttacaccaga tgccgttctt cagaccgttt caaagacggg caagaagacc tcgttctggg 
001981 atgctgagcc tgcacctgtt gaagctactg ctgcttcatc ttaaaatgtc attttatctc 
002041 ctgtgatatg taaaggttga tgtaacaatt tcccagtgga actgtcttgt gagatcacaa 
002101 agttgtctgt tcttatgatc ataacttgaa gctatttcaa ataatatcag acagctagtt 
002161 acacatatgt acatctttgt atttctctat cctaccagta ttggactatt ggtatgatca 
002221 atttggtaaa aatacatggg tcatcacatt gtttctgtgg c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV925933 basdg08 459
more... (Total Hit Count: 22 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ213787 wh24e04 394
more... (Total Hit Count: 155 )
/rice/oryzabase