cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121489     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0180100 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 4,691,658 -  4,695,635  ( + ) ;   3,978(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,691,658 -  4,691,731 ( + ) ;   74 (bp)
Exon 2 Location 4,691,824 -  4,691,934 ( + ) ;   111 (bp)
Exon 3 Location 4,692,041 -  4,692,141 ( + ) ;   101 (bp)
Exon 4 Location 4,693,061 -  4,693,160 ( + ) ;   100 (bp)
Exon 5 Location 4,693,238 -  4,693,333 ( + ) ;   96 (bp)
Exon 6 Location 4,693,453 -  4,693,620 ( + ) ;   168 (bp)
Exon 7 Location 4,693,714 -  4,693,839 ( + ) ;   126 (bp)
Exon 8 Location 4,693,913 -  4,693,966 ( + ) ;   54 (bp)
Exon 9 Location 4,694,092 -  4,694,339 ( + ) ;   248 (bp)
Exon 10 Location 4,694,434 -  4,694,542 ( + ) ;   109 (bp)
Exon 11 Location 4,694,631 -  4,694,930 ( + ) ;   300 (bp)
Exon 12 Location 4,695,146 -  4,695,635 ( + ) ;   490 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os08g0180100 Os08t0180100-01 J023150L05 216208 J023150L05 7543 LOC_Os08g08210.1 AK121489 35537 AP008214.2 255678087 BAF23051.1 113623106 NC_008401.2 297609017 NM_001067672.1 115475080 NP_001061137.1 115475081


Chromosome: 8 ,  position: 4,691,658 - 4,695,635 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agggtcttgg agttgtttgt aacaaaacgg gtggatttgg tgtagacgac tttgtcatcg 
000061 agttctttgg ggaggtatgt gatttttacg atcaacaaat cttcctagat gacatgcaaa 
000121 gggatataac aatggtataa tatttgtgaa attgcaatat ctgcaggtat acccttcttg 
000181 gagatggtat gaaaaacaag atggcattaa gcatatacaa aacaatagcg acgatcaagc 
000241 tcctgagttt tacaacatta tgctagaacg gccaaaggta ttagtgcaat ctcaaatttt 
000301 ttaatgtgac cttgcatgtg acttatgtta ttccaggtca aggtacatat aactgatcgt 
000361 tttacctttg ttatgataaa aagggagacc gtgatgggta tgacttggtt ttcgttgatg 
000421 caatgcataa ggctaactat gcgagcagaa tttgtcactc ctgcaaccct aactgtgaag 
000481 caaagtaagc ttcttaatct tcagattagt accttgtgtg gtgtatgtgt actgccttat 
000541 cactcctcct atagtacttc ctctgtttca aaatatagtg tgcattttgt ttcgttagga 
000601 caagagtttg gccaacgatt actctattat gatataattt ttacgacaca taaatttatt 
000661 agattcatat ccagaagtac ttatgattat acttttgtat cacaaatgat attctaatag 
000721 agcgattgtt ggtcaaagtc gtcctaacga aacaaaatat gccctttgtt ttgaaacaga 
000781 gggagtacct ttttagtgtt gacctgtact tttggactgt atttgtggaa ggggtttact 
000841 ctgttaacta aatttatata tgtggtgttg cagtttgcac gtgatatatg cttggcccta 
000901 tcatttacgc aactaccttc tattgtcttt ttcatatttt gaaaggcctt tgtgacttca 
000961 ttgttgttgt attctgtggt ggatccatcc tatgctttga actgtagtgg gggaatgcga 
001021 tttcactctt cctgcatgtc tacttcattc tatttggttc accatgcgct gttgtatttt 
001081 tttctgaaca aagtccctga tggcctgttt ttgttgttcc agtagtgaaa ttcagaaatt 
001141 gagaacaaac agggaagggg gcagcaatca atggatggct aacaatttat aaaaactgaa 
001201 ctgcacattt atagtttaag cattttctgt acacctgtac ctaatattga aggactctta 
001261 agattgaagg agaactggcc catattggtt tccacaaagc ccactttcca tgctagtcaa 
001321 atttataaat tagtaaaatg cactcataag attacatgtt atacctgtaa taataactca 
001381 cgattattaa aatatatttc cagagtaacg gctgtggatg gtcattatca gattggaatt 
001441 tacactgttc gaccaattgc agaaggcgag gaaatcactt ttgattacaa ctctgttact 
001501 gaggtgattg ccatttctag tttctgtata agttctaacg taaattgctt tatcttatga 
001561 atacattcta attatgccag agtaaagaag agcacgaagc gtcagtttgt ctctgtggaa 
001621 gtcaaatatg caggggcagc tatttaaatt tttctgggga aggagctttt gaaaaggtaa 
001681 acttcattct tgtttacagt aatttaggaa ctgacacttg cagtttatca aattgtcata 
001741 cactgaattt tatactgcat catttcctct catctactaa tatcatttgg aacaggtctt 
001801 gatggaattc catggtgtgc tcgatcgaca tagtcttctg ttacaggctt gtgaagcaaa 
001861 ctctgtttct caacaagact taattgactt ggggagagct ggtcttggta cctgtttgct 
001921 tgctggtttg cctggatggc ttgttgctta cactgctcac ctggtaattg tagttaccat 
001981 tttcttaaag cttctttttt cttgatacag taatcagtat cgtgatccct catggctatt 
002041 tttcctgtaa acaaaggtgc ggtttatatt ctttgagaga cagaaacttc ctcatgagat 
002101 ctttaaacac aatgtggacg agaagcgcca gtttttcaca gatataaaca tggattccga 
002161 gaagaatgat gccgaggttc aggtgggtct tcgaacggct acaagttgca acgtaattta 
002221 cataaaatcg atctaattct gtcatcacta ctcaggccga gggagttctg aattcaagat 
002281 tacagaattt gactcataca cttgacaagg tgcgcatttt atgcccccta gcttgaagtt 
002341 attcagtata agtgaacaaa aaacatgcac tatgcactaa caacccaaaa gaagtctctt 
002401 ctgatgcatt tttatggatc attgttatgt tcaggtaaga tatgtcatga gatgcatatt 
002461 tggggatccc aagaatgctc ctcctccact ggtgaggcta actgggagaa gtctagtttc 
002521 tgccatctgg aaaggggaag gctcgttagt tgatgaactt cttgagtcaa tggaacctca 
002581 tgttgaggaa gatgtactta ctgacctcaa agccaaaatt cgtgctcatg atccatctgg 
002641 ttccgaggac attgagggag aaatccgaag ttctctttta tggtgagttt agaatatatt 
002701 cttgttttgt ttgaccatta atctgactct tccctccagt cacctgtatc tggaatctga 
002761 ccgccctttt cttcaggttg cgtgatgagc tgagaactct ttcatgcaca tacaagtgtc 
002821 ggcatgatgc tgctgctgat ttgattcaca tgtatgctta cacaaagtgt tttttcagag 
002881 tccgagtaag tgaaaacttc ctcttaattt tgcaacaaat gtttgtgatt tttctctgta 
002941 ccaaaggact gactcaagga tcaccacatg caggattaca agacggtaaa atctccaccg 
003001 gttcttatca gtcctcttga tttaggtccc aaatatgcag ataaactggg accaggcttc 
003061 caggagtact gtaagacata cccagaaaat tattgcttag gtcaactcat ttattggtat 
003121 agccagaatg cggagcctga atctagattg acaagagcta gaaagggttg tatgtcattg 
003181 ccagatgtat cctccttcta tgtgaagtca gtaaaaccaa cacaagagcg agtctatggc 
003241 agcagaactg tgagattcat gttagcgcgc atggtaagtg cttacctttt atatgtcatt 
003301 gtggctaaaa tattccaaat tttgttcttg gaactcgttc agtgtggaaa acaaaagaga 
003361 atatttgttc tagacaatat taaatcatct tctgttggat tgagtatttc tcttcatata 
003421 tgcaatatat tacagtttct ttccctgact cccatctttc tcaatgaaac tgcgtggttt 
003481 tattacagga gaaccaggca caaaggccat ggcccaagga ccggatatgg gttttcaaga 
003541 gtgacccaag attctttggt actccaatga tggatgccgt attgaataat tccccccttg 
003601 acaaggagat ggtgcattgg ctcaagacaa gatccaacgt cttcctaggc tagccaagga 
003661 attgtaggca gagggtattg gtttttttcc tttggagatt ttagtcagac accattcttt 
003721 tttcttccta ctcacacctt tcctacctaa tcatggggat ttagctttta gatggcaggg 
003781 taacaacagt ctctctcacc ttccccattt gtacagcccc ctcctcccct taccttgtag 
003841 agatgtgttc cattattaac tgatagatcc atcattgatt taatgtagcg ccttttcccg 
003901 ttgcgtagaa ttgtcacctc ccaatgtgca atgtggatat tcatgtgtaa atgcaaaaca 
003961 gtagcaatct taaattcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AV836708 basd26l16 569 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ898207 whthkles15g24 700
more... (Total Hit Count: 22 )
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