cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK102203     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0854500 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 38,543,418 -  38,544,705  ( - );   1,288(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 38,543,418 -  38,543,985 ( - );   568 (bp)
Exon 2 Location 38,544,095 -  38,544,705 ( - );   611 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os01g0854500 Os01t0854500-01 J033087F22 213050 J033087F22 14716 LOC_Os01g63510.1 AK102203 42097 AP008207.2 255672756 BAF06751.1 113534368 NC_008394.4 297598437 NM_001051372.1 115441114 NP_001044837.1 115441115 Q8W0F1 WOX9_ORYSJ


Chromosome: 1 ,  position: 38,543,418 - 38,544,705 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 agcattgctt ctgatcagaa gaagatcccg gaagagacca aatcagaagc taaacctatc 
000061 taccacaagg ccaagttacg ttagaccgtt ttgatcagtg aattagcttt caagcagttc 
000121 tactgctccc agccgctcga tcgatcgatc gatcaaacaa ggtagctagc tagctcagga 
000181 tcaaatctgg tttgtctaca tatataggta gtgatcgatc agtcggtcgg tcatggaggc 
000241 tcttagcggg cgagtggggg tgaagtgtgg gcggtggaac ccgacggcgg agcaggtgaa 
000301 ggtcctgacg gagctgttcc gagcggggtt gcggacgccg agcacggagc agatccagcg 
000361 catctccact cacctcagcg cattcggcaa ggtggagagc aagaacgtct tctactggtt 
000421 ccagaaccac aaggcccgcg agcgccacca ccacaagaag cgccgccgcg gcgcctcctc 
000481 ccccgacagc ggcagcaacg atgacgatgg ccgcgccgca gcccacgagg gcgacgccga 
000541 cctcgtcctg cagcctcctg agagcaagcg ggaggccaga agctacggcc atcatcaccg 
000601 gctcatgaca tgtaagcata catactttga ttaattattt cgcctatata catgcatacg 
000661 tacgcatgaa tacccatgat cgaatagctg atcaagttgc tgttcgatcc gcgcttgcag 
000721 gctacgtgag ggatgtggtg gagacggaag cgatgtggga gcggccgacg agggaggtgg 
000781 aaacgctgga gctgttccca ctcaagtcgt atgacctcga ggtggacaag gtccggtatg 
000841 tgaggggcgg cggtggcgag cagtgcaggg agatctcgtt cttcgacgtc gctgccggcc 
000901 gggatccgcc gctggagctc aggctttgca gcttcggcct ctagatcgac ccgtgcattg 
000961 atgtgccgca catatggcat gagatgcagc ttgccgcgac tgtacctggc ctcttgtcgc 
001021 tgtgcctagt cctagttcta gctgccccac atcaaaagga gtacgtacga gatgtcatga 
001081 gatacggcat gtgttgtggg aaagtccgtt gttgcatgca gtatctggga ggatcaggaa 
001141 agagcacgca aacgagattt ccccattgcc cttttccttg gtctttccat catgagatgt 
001201 acttctactt ttcttctttt ctgctacatg gatactaaca tggtcactgc tgatacttct 
001261 atatgatata tccattaatt aatattcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ629269 whcs18n02 764
more... (Total Hit Count: 2 )
/rice/oryzabase