cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK120938     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0549300 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 27,653,859 -  27,656,600  ( - );   2,742(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,653,859 -  27,654,262 ( - );   404 (bp)
Exon 2 Location 27,654,791 -  27,654,913 ( - );   123 (bp)
Exon 3 Location 27,655,461 -  27,655,559 ( - );   99 (bp)
Exon 4 Location 27,656,504 -  27,656,600 ( - );   97 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os08g0549300 Os08t0549300-01 215657 J023037A21 20878 LOC_Os08g43580.1 AK120938 30844 AP008214.2 255678087 BAF24355.1 113624410 NC_008401.2 297609017 NM_001068976.1 115477690 NP_001062441.1 115477691
Os08g0549300 Os08t0549300-01 215657 J023037A21 20878 LOC_Os08g43580.2 AK120938 30844 AP008214.2 255678087 BAF24355.1 113624410 NC_008401.2 297609017 NM_001068976.1 115477690 NP_001062441.1 115477691


Chromosome: 8 ,  position: 27,653,859 - 27,656,600 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acgcgcttcg tgctcgccgc cttccacctt cgtgctaccc cccgccatgg cttcctccct 
000061 cgccggatcc gccctctcct tcgccacccc cgtcaaggtc agatcccccc acccgccacc 
000121 ttgttctgcc gtacatcgat ccatcgattc atcgatccgt gtgcctgact ggtttctggg 
000181 tgctgggggt tctttttttt tttttgagct ttcggcttga tctcgggcct gtttctttgg 
000241 ccgatctgtg ggtttagctt cgtgcccttt ggtggagcga ttcagatggg agaacggcga 
000301 aaagttttct ttcttttttt ttttaccctt ttcgctttcg ggtgggtggc acaagtgctt 
000361 ttgtgtgcgt ttactgatcc attttgtata gcagatccga gcagatctgc cttttgtgta 
000421 ggttgaaaag gctgcaatat acttgtatcc gtatgaaatt tccgccttgt taggctacga 
000481 gtagatttcc gcatagtgat gatgaattcg ttagtcgtta ctgggattta ctgattctac 
000541 ttggatggta acaaaactat tggtcctttg ggttctccat aaaaaagttg gttctagtat 
000601 tgatatgttg tactaccacc taataaagaa cgggcgtatc ttgttttccc ttggcacgaa 
000661 aagggatttt tgtttcgccc cgtcaccatc cggcttacta gcctggattt ttgtcatacg 
000721 gcttcgcaaa attcttatgt tcatggtata tagggaaatt gtaataaaat ctcttacaga 
000781 aagtaaagaa aaaaaaactc tgatgagttt gcaactatgc attggagatt atttctcatc 
000841 gaaatcatct ttactcattt caacacccca tactggctac tgagacaaat tcaagacata 
000901 cagctaatgt gatactagaa cagtagaatt atgacaataa cactgttttc tatgctatgt 
000961 tcttttcccc tgtggatagt atgctattcc tttttctgca ttacttctgt tgtctaaata 
001021 aacttgttcc atgaattgca ggcagtcaag actaattcga tatctttcac cagcgcaagg 
001081 aagggaaatg catttctccg cctgcagcca gtgcctatga gatttgctgt ttgctgtgcc 
001141 gtgagttcca tactttcttg tcatgcatga ttttttttcc ccatcaatcg ctgctttgct 
001201 atgctagaga tgagatatcc gctagcagtt gtgttatttc tggatgaatg aaaattttca 
001261 cctggggcca aaaccctttc ctttatgacc agggagggtt taatgcttta gctgtttgga 
001321 attcaccttt ccattctaga aggacctttt tgtttcttgt atcattgatt ttttggtagg 
001381 gtaaagttgt atttggttgg agaccaattt agaacaagcc ttgagtagag tatagaaaat 
001441 atcaaactag acattggcaa tgccaatggt ttggcttcaa accaaaacca ccatatacac 
001501 tgttcaaact accaaaatat tggtagggca ccgttttggc actaatccaa aacggcccta 
001561 tactccgttt ttaaatgtat ggcactgttg actgcgctat ttcccttttg cattttgtgt 
001621 tgtcgtgtgt tttcctgcta caatctaaag agtgtctcct aaccccttct taatttccgc 
001681 tcaataggca aaaaaggaga cagtggagaa ggtttgtgac attgttaaga agcaactcgc 
001741 tgttcctgag ggcactgaag tttctggtgc atccaagttc tcagatcttg gtgctgattc 
001801 actggacacg gtaactcccc cataattttt tgagtgatgt catgcatatg gttgttttga 
001861 actaagcagc accttaccta aattttctat atattttggg ggcctgaata gttgtatcct 
001921 tgtaatcaat ttggctcaca aaataatatc tgagggatgc tttggtagca tctctcgttt 
001981 tacaagtggc atctatgtcc ttttagagat gtggaatggc tttacagcca tagtgattat 
002041 tggtgaggct cgctcttcat gtaggtcttg ttttccaaat ctcttcagta cttttaagac 
002101 tagaatatca gatgcattgg aattcccaag ttgccacatg aagtgtgata actgttgcat 
002161 caggtgtgaa aatgatcaaa caagatgttt aatctatgaa gttcaggcac atgtgctttg 
002221 tttggatgtt tagtctaatt cagttataag ttggtagaag cctgtatctt cttttgtttg 
002281 agtaaaggat tacatgttca attgcaagta gtaaaactca attgttggat tggtgcaggt 
002341 tgagattgtg atgggtctcg aggaggagtt ccacatcagc gtcgaagagt caagtgcgca 
002401 gtcaattgca acggttgaag atgccgctgc actcatcgac aagcttgttg agcagaaatc 
002461 tgctgaagcg aaatcatctt gatatgcaca aatcacaatg ttgaagctcg taaactagct 
002521 ctacttctac cttgggccag cccttgttgt tttaagattg tatccttatc gccttttttt 
002581 tttatgactt gatggtttgg tgttctcaag attattgccc tctgtgccgt aataatacta 
002641 attaaagtat ttaggccctc tttcttttag cttgggatta ttataatcca gattattggg 
002701 agtaagctga aaaaaacaga caacttattg aagtagctta tt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV913560 bags22i04 473
more... (Total Hit Count: 15 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ209627 wh14p20 583
more... (Total Hit Count: 361 )
/rice/oryzabase