cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK120757     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os08g0472800 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 8
RAP - Location, Length 23,376,619 -  23,382,168  ( - );   5,550(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 23,376,619 -  23,377,178 ( - );   560 (bp)
Exon 2 Location 23,377,292 -  23,377,410 ( - );   119 (bp)
Exon 3 Location 23,378,012 -  23,378,118 ( - );   107 (bp)
Exon 4 Location 23,379,639 -  23,379,717 ( - );   79 (bp)
Exon 5 Location 23,380,301 -  23,380,390 ( - );   90 (bp)
Exon 6 Location 23,380,506 -  23,380,778 ( - );   273 (bp)
Exon 7 Location 23,380,864 -  23,381,016 ( - );   153 (bp)
Exon 8 Location 23,381,216 -  23,381,537 ( - );   322 (bp)
Exon 9 Location 23,381,675 -  23,382,168 ( - );   494 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os08g0472800 Os08t0472800-01 J023007D09 215476 J023007D09 20765 LOC_Os08g36860.1 AK120757 37827 AP008214.2 255678087 BAF23935.1 113623990 NC_008401.2 297609017 NM_001068556.1 115476849 NP_001062021.1 115476850 Q6ZDE3 ABAH2_ORYSJ


Chromosome: 8 ,  position: 23,376,619 - 23,382,168 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gcaccaccat ttggaagaat cctccccaag attgctcgat cccctcgtgt ccctctctcc 
000061 caacaacact gcgccacaga cacaaatcac actcagatac gaaagataag tacagagaga 
000121 gagagagggc acggattata cactgcacac aagcatatat atatatatat cgattagcca 
000181 tccgtgctga tctgaagagt atcatcggta gagagtttta cagagttgtt tggacaagga 
000241 gacacacaca tggctttctt gctcttcttt gtctttgtga cagctgcagt gctgtgcttc 
000301 gtcgtcccgg cgttcttgct gctctgcacg agcgtgcaga ggaggagaga tgttggacag 
000361 ggtggagggc gagattggca gaagaagaag aagctcaggc ttcctccggg atccatgggc 
000421 tggccgtacg tcggcgagac gctccagctc tactcccagg accccaacgt cttcttcgcc 
000481 tccaagcaga agaggtaact aggcaattcc tccgtctcat aatataaaaa gttttagctt 
000541 atatagtcag atatataatt taaaaattga tggcgaatgt gcttaatatg ttgtcgtcct 
000601 cgttgatggt tgtgttattt ttgggtgtaa ggtacggcga gatattcaag acgaatctgc 
000661 tggggtgccc gtgcgtgatg ctggcgagcc cggaggcggc gaggttcgtg ctggtgtcgc 
000721 aggcgaggct gttcaagccg acgtacccgc cgagcaagga gcggatgatc gggccgtcgg 
000781 cgctcttctt ccaccagggc gagtaccacc tccgcctccg ccgcctcgtc caggccgccc 
000841 tcgccccgga ctccctccgc gccctcgtcc cggacgtcga cgccgccgtc gccgccacgc 
000901 tcgccgcctg gtccggcggc cacgtcgcca gcaccttcca cgccatgaag aaggtgagcg 
000961 cacgcacacg cacacgcagt tgccgccagt tgccacagac caggggtcga tcggctcggc 
001021 gtcacgcgac acgagtgaag ctaagtgacg tgtggggcgc gcgcgcgtcc cggacgtgtt 
001081 tgttgttatg cgcgcgcggc gtgtacgtaa tgcgtgaccg gtgttcgtgt tctctctctc 
001141 ttttgtatcc agctctcgtt cgacgtcggc gtcgtgacca tcttcggcgg ccggctcggc 
001201 cgccggcaca gggaggagct gaggacgaac tactccgtcg tggagagagg ctacaactgc 
001261 ttccccaacc gcttcccggg gacgctctac cacaaggcga tccaggtata cgcacgcgcg 
001321 cacccgcaaa tctctgtcga attcgacatt gatcatcatg caaattaaac ggcatgcgtt 
001381 gcgcatgcag gcgaggaagc ggctgcgcgc gatcctgagc gagatcgtgg cggagcggcg 
001441 ggcgcgcggc ggcggcggcg gcggcggcgg cgacgacctc ctcggcggcc tcatgcggtc 
001501 gcgcgacgac ggcaccgccg gcgcggtggc gctgctcacc gacgaccaga tcgccgacaa 
001561 cgtcgtcggc gtgctgttcg cggcgcagga caccaccgcc agcgtcctca cctggatcct 
001621 caagtacctc cacgactcgc cgaagcttct cgaagccgtc aaggtaaacg caacgataat 
001681 taaccagagt ttaagtactc gatcacgatc gagcgagaac gatggtgagc taaccaccga 
001741 tgcttttttt ttccgtcgtg tcgatcgcgc gcgcgcaggc ggagcagatg gcgatctacg 
001801 tggccaacga gggcgggaag cggccgctga cgtggacgca gacgaggagc atgacactca 
001861 cgcatcaggt acaagcatgc ctctttgttg tttttactcc cgttttattg ttacaaggaa 
001921 gacgaatatg cacctattgc tgcatcacac atcacggaaa agaatggctt tagtttagtt 
001981 tggagattag ctagcatttt gtgtttggaa gtatatgttt ggctgtgtat atctactgta 
002041 tatctatatg tgtggatata tatagagaga cttaattatt attcttattt ggtttagaaa 
002101 tgaggtggga tgagttagac ttatccttat ttttttaatg ggataatcca attatctgtt 
002161 tggcatgaga gatggagtga tcttattttt cttagggaag gagggggtgg cccacatatc 
002221 aataacagag agaaagtgag ttagattggt ccaccaaatt ttgagatatg aaattgatcc 
002281 gaatcttagg gaaatattcc ttttgggaat caatccatca catctatttc taaacaaaca 
002341 tcctgaaaaa tggatttgcc ccaacctagc ctatatcaat tgaaccaaac acatgccaaa 
002401 agttcagtag cactgtgctc atttgtgcca ctttgtttcc attcgatgca ggttatactg 
002461 gagagcttga ggatggcgag cataatctcc ttcacgttca gagaggcagt cgccgacgtg 
002521 gagtacaaag gtaagcacgt gttcaacatg gattgggagt cagtgtacac tgtactggag 
002581 tcactgaaca aaagctagca gtagcagctt gcattttgca gtacgttagc cagttgtacc 
002641 accagctgga tcatatatat ggatcatgca tgtacagttc ctcccattgc acctcgatgt 
002701 ggtcctaata atatggactc caaattaaag tcaccttgag aaaatatcgt acaagattaa 
002761 acaataagaa aaaaaatgga acctcggata aggccatgga aataaataaa tgggtttaaa 
002821 aatggataat atcgaggtgt ctacacatat atatcatgga tcataagtca accttgcatt 
002881 catgagatca atgttaagga acatacacat cttcaagcat atctagtggc caaaaatgat 
002941 cgaaatctat catacctttt gggaataatt gttgatttat tgtgccagtc aatctccttt 
003001 tttcacatac tatagataaa aatcctagca tatgcatata taggatattt ttatgcgcaa 
003061 tattgtagaa catatttccc attaattgtt tgatctatca aagtttggag gttcctagga 
003121 ctagctagaa aaggtgtaaa ccgttttggg agggttaatg cttagcaacc tcaccaaatg 
003181 ctagtaatta actccaaccg ttttgggagg gttaatgttt atcatgggag ggttaatgtt 
003241 ttctttaaaa aaatattgtg gtcttctgta ataagactga taaccaactg catgcatgct 
003301 cccccttgaa gagaggtgtt cagtaaattt caatcgaaat aggggcaaca gacaaattca 
003361 tattttgtag caaagataaa gatatactgt aaataaaaaa attaaaatta aggaacataa 
003421 actacatgat gagtaacgtc atatccacct cagcataatc atgctgctcc gaacaagtgg 
003481 cttgattatt tctcatgcat ataagccaca tggcaataaa gagggatgca ttttaatttg 
003541 tttaggcaca gttaattgtc gtctccagtg ttgtatgaac agcagagcac cctatttcag 
003601 cttccttgtg tgatatgata tactgacatg agatggtgta tttttcgcca taaaaggggg 
003661 caaaacatcc atgtcctctc gttccgatta atatctgaat catcagcatc acaacgggcg 
003721 gtccagatgc atccttagct gctcctgttc ccggccggca ccggtagcta gcgaccgatt 
003781 cactccattt tcgagtggca gcgtagctgc agaaatgaat tgagattggg aaagcaattg 
003841 aggtggttct gggaacattt attatgtcgt ataatagaag cggcataata attaggaaca 
003901 ttaattatgt agagtagcac tcagtgttta atttgcaaag tggtatcttt cgacaagtta 
003961 aagtcgcata tatatatttt cgtcactgaa ttcaatttcg agtgagactg aacgacgttt 
004021 gtgtcgatct gttttgtggt gttttgtcag gtttcctgat tccaaagggg tggaaggtga 
004081 tgcctctgtt caggaacatc catcacaacc cggactactt ccaggatcca caaaagtttg 
004141 atccttctag attcaaggta atgggtccta ttccttactc ctaagctact gctcactgac 
004201 ccttgaatat ggattgcatc agactaaagt aaactattag cggcattaag tacacacgaa 
004261 gacttttagg acatcccatc agaagagtgg tagtagcaca gttgcaaatc ctcacacacg 
004321 ctcaaaattc agactctggt ctcgcttacg agacatgcag caaagtcaaa ggaagcaatt 
004381 actggctgct taccatcttc gttcacactc attgttgact cttttgcgta gactcattaa 
004441 accagatcac taatttaaca tcagtttaat tccccggcca ggcctgcact agcttgggcg 
004501 tacttaacga cgacatctct gaattttgcc ggccgcttca gtaagcaggt ggcagctaat 
004561 taagtgttgt gcatgcacgc ggccaagtcc aaaccaaaca ctagctagag tacaaaggtt 
004621 aatttaggct cactaagata caatctctcg agcattagca gccggagatt aggccgcgaa 
004681 tcttttggac tttggttgga ccgagagtga ctcatccttc agtgtacgtg cgtgcgtgac 
004741 gcgtggctgt gcgtgcaggt ggcgccgcgt ccaagcacgt tcctgccgtt cgggagcggc 
004801 gtgcacgcgt gcccgggcaa cgagctggcc aagctggaga tgctcgtcct cgtccaccgc 
004861 ctcgtcaccg cctacaggta agtgatacgg cgtacgtgaa aaccaccgtg ttttccacgg 
004921 cttttgccgg tggcgatcga cagtgtgacg gacggcgtac gagcggatga tgttgttgtt 
004981 gttgttgcag gtgggagatc gtcggggcga gcgacgaggt ggagtacagc ccgttcccgg 
005041 tgccgagggg cgggctcaac gccaagctgt ggaagcagga ggcggaggag gacatgtaca 
005101 tggccatggg caccatcaca gcagcaggtg cttgacacgt actactgctg atggtggctg 
005161 atgtgtcctt ggtttctttt cgtcgccgtg tgtgtggatg caatggtcga tcgatcgatc 
005221 tctcctgtaa tcctcggata aagcaaaggc catgggaggg atgagatgat cgtgtagcaa 
005281 aatctctctt cactttttcg tgtgtgtgtg ttgggttgga taatggtggt ccatggatat 
005341 cgttcgatga tcgatgatga tgatgctaaa cctagtcttg gtgtgcctag tgtagcacta 
005401 ggagtagtag tttatcaatt gcttagctgt tagctagcat cgctttgcat tgggttaata 
005461 cagctagctg tcaagcttat aagtaattaa gctctctaat cagggtttta aatctcctgt 
005521 ttgagaagtt tgagaaggat tctctcatgt 

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ875200 whthls18d03 461
more... (Total Hit Count: 6 )
/rice/oryzabase