cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK119595     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0467100 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 23,059,631 -  23,062,909  ( + ) ;   3,279(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 23,059,631 -  23,060,199 ( + ) ;   569 (bp)
Exon 2 Location 23,060,338 -  23,060,740 ( + ) ;   403 (bp)
Exon 3 Location 23,061,598 -  23,062,909 ( + ) ;   1,312 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os08g0467100 Os08t0467100-01 002117D09 114778 002117D09 16523 LOC_Os08g36390.1 AK119595 38356 AP008214.2 255678087 BAF23915.1 113623970 NC_008401.2 297609017 NM_001068536.1 115476809 NP_001062001.1 115476810


Chromosome: 8 ,  position: 23,059,631 - 23,062,909 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aaagctggta gaaagctgcc tcccctctcc tctcctctcc tctctcatct cccccctttg 
000061 gtgttgtctg tgtagcagca aagccaaaaa aaacaacact gctccaaaca cctttgctcc 
000121 tcatcctcct cctcctccct ctcgattcct agctgtactc actcactgca tctcctcctc 
000181 cccttttcgt ttgtttattc tcttctccgg cttcctcgag ctcgccttag ctagaagcct 
000241 gtggccccgt gatctctcac tgttgtggct tatatagaga tagatatccg gctcggttcc 
000301 attgatccgt tcttgtggag ttgtgtgatc agagctggag agattggcta ggttggagga 
000361 ggaaggggaa ttcttggttg taagggaaga ggtgggagtg gtcaccggcg gtgcgcgcgc 
000421 ggaggcggac atcatgctga gttcttgcgc gccgacggcc gtgccgccgc aggatgcgtc 
000481 cggtgcggcg acggagccgt tccggtctct gcagatcgcc accgccggtg ccgccgcgaa 
000541 gaagaagcgg cggccagccg ggacacctgg taagtggagc tctatacaca catccaatta 
000601 caccggctac gtacgcgcgt tcttgcgccg gtcggtgttt gtcttgagga ggtagctaac 
000661 gagcacatct gtgggcaatg gcgcgcgtcg ccggccggcg ggagcagacc cggacgcgga 
000721 ggtggtgtcg ctgtcgccga ggacgctgct ggagtctgac cggtacgtgt gcgagatctg 
000781 caaccagggg ttccagcgcg accagaacct gcagatgcac cggcggcggc acaaggtgcc 
000841 gtggaagctg ctgaagcggg aggccggcga ggcggcgcgg aagcgggtgt tcgtgtgccc 
000901 ggagccgacg tgcctccacc acgacccctc ccacgcgctc ggcgacctcg tcggcatcaa 
000961 gaagcacttc cgccgcaagc acagcggcca ccgccagtgg gcgtgctccc gctgctccaa 
001021 ggcctacgcc gtccactccg actacaaggc tcacctcaag acctgcggca cccgcggcca 
001081 cacctgcgac tgcggccgcg tcttctccag gtacggccac cgccaccgcc accgccgccg 
001141 ccgcatctcc atgcatccat taatctcata ttctcacatt taacatgcca attacatatc 
001201 gctccaaatc ttttacacac ctagatagta ctatacaatc ttctcctttg caataatctt 
001261 tgtcaaatgc gggcgagaaa ggcgtgatga tttttttctg gagaattttt gcggggtcgc 
001321 tttgccattg taggcctcat cagcaacacc ctttatgagc agtagcatat ctatattcat 
001381 tcatgccatc ctctggtacg agtatttact cccaggaggg gagtagtatt gtggcatcaa 
001441 caggaaagag agagagagag gtagctagcc tagctgagag atgtggcaat gtagcgcgag 
001501 ctctgcaggc acaattcccg atgacgccct ggctatcaat cgatgtgtgt ggctgtggcc 
001561 tggccgtccg tgtgggcgta gcgtatgcat catacatata ctacggcact ggccattgct 
001621 ttgatgttag cttggcttgt gttttgcctt tgcaggggct ccatttaatg caatgccacg 
001681 gccacgaaac ccaggctatg ctattgctag cagctggttg cagggcccaa aatttcacgc 
001741 ctgacaaaac ccccctgatc gcctccttgg cttcttctcc gtccgcctca gtatctcacc 
001801 catgcgcata gaatactagt gtaatccaaa gctaagctat agctagagac ttttctttct 
001861 ggctgtttat gttgccggtt attagtacca cctcgcttgt ttggtgccgc gtgggggttg 
001921 tttttagtgg cgctaacgag atgcggcgtg tggatgttga tgcgcagggt ggagagcttc 
001981 atcgagcacc aggacgcgtg caacgccggc aggccacgcg ccgccgaggc gtcatcgtcc 
002041 ccgggacgcg gcggtggcgt cgtggttggt gcgccggcgg cagcatcgtc gtctcagcag 
002101 cagcagcttt ttgcggtgcc ggcttcgttg tcgcggacgg cgtccagcgc cagcccgtcg 
002161 agcgacctgg tggtgagccc ggtggcctgg cctgctactg gtggtggtgg tccggcaatg 
002221 gtgagtcccc gtgctgcggc gccggctcct gctggcggta gcatcgcggc gttccaccac 
002281 cggttcactg acccggcgct gtcgccaccg acgccgtgtg gtggccggcg aggaggatgc 
002341 cacactaccc acagcctgga gctgcagctc atgccaccgc gcaccaccac cacctgcgca 
002401 ggcggcagcc tcggtggtac tccagttgcc accgccgttg ggtactacgc ttcctcttcg 
002461 ccgcattcgc ctgctgctgc tcttccgtcg cggcagccgg tcgccgacgc aatgcggctg 
002521 cagctctcga tcgggttcgg cggcgcacgc gatgatggca acaacaacag cagcagcagc 
002581 agcggcgagg tgtcggcctc ggcgacgagg ctgaaggagg ccgcccacga gcagctgcgt 
002641 ctggcgatgg ccgagaaggc ggccgcggac gaggcgcgcg cgcaggcgaa gcggcaggcg 
002701 gagctcgccg accaggagct ggcgaccgcg cggcggatgc ggtaccaggc gcaggtggag 
002761 ctcagccgcg cgcacgtgct ccgcgaccac gccatacgcc aggtcgacgc cacgcagctg 
002821 cagatcacct gctacagctg cagccacaag ttccgggcga gagcggccgc catgatcagc 
002881 tccgacgtcg ccagctacgt ctcgtccgtc gtcaccgagg gcggcgacgc cgaggtcgac 
002941 aacgacggca acttgcaccg ccgccgcctc aacgctgacg atggcatgcc aaggggccat 
003001 tctaggacga tggcaatgga cctcaactag ctcgcaaaaa tcactggaag aaaaaacaat 
003061 cttttttttt cttttctttt gtgccagatt gctctccttt tgttttacca atgagctagc 
003121 tggtggtggt atgtgctcat gtgcatgcac catgcaatgg cgatgtattg taattagatg 
003181 cagtgatgag atcacaagct ccagtgccta gtggttgtgt tctctcgcat ggcagattgg 
003241 ctgggcagga aaaagctaaa aggggtctac tactacgct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250971 FLbaf100p19 2343
more... (Total Hit Count: 3 )
/rice/oryzabase