cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK102106     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0831900 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 37,326,804 -  37,328,700  ( - );   1,897(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 37,326,804 -  37,327,523 ( - );   720 (bp)
Exon 2 Location 37,327,609 -  37,327,894 ( - );   286 (bp)
Exon 3 Location 37,327,988 -  37,328,700 ( - );   713 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0831900 Os01t0831900-01 J033084D13 212953 J033084D13 14667 LOC_Os01g61550.1 AK102106 33714 AP008207.2 255672756 BAF06616.1 113534233 NC_008394.4 297598437 NM_001051237.1 115440844 NP_001044702.1 115440845 Q8S230 AMT22_ORYSJ


Chromosome: 1 ,  position: 37,326,804 - 37,328,700 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acttcgcgtt ccatcgctcg ctcgctctct cgctttgctt cgagctgaga atgcacctaa 
000061 ggatggcgtc gccgccgcag cccgggccgt acatgccgga cctgccggcg gtgccggcgt 
000121 ggctgaacaa gggcgacacc gcgtggcagc tggtggcggc gacgttcgtc ggcatccagt 
000181 cgatgcctgg gctggtggtg atctacggca gcatcgtgaa gaagaagtgg gccgtcaact 
000241 ccgccttcat ggcgctgtac gcctacgcgt ccacgcttat cgtgtgggtg ctcgtcggct 
000301 tccgcatggc gttcggcgac cggctgctcc cgttctgggc caaggccggg ccggcgctga 
000361 cgcaggactt cctggtgcaa cgcgcggtgt tcccggcgac ggcgcactac ggcagcgacg 
000421 gcacgctcga gacgccgcgc accgagccgt tctacgcgga ggcggcgctg gtgctgttcg 
000481 agttcgagtt cgcggccatc acgctggtgc tgctcgccgg gtcgctcctg gggcggatga 
000541 acatcaaggc gtggatggcg ttcaccccgc tctggctcct cttctcctac accgtcggcg 
000601 cgttcagcct ctggggcggc ggcttcctct accagtgggg cgtcatcgac tactccggcg 
000661 gatacgtcat ccacctctcc tccggcgtcg ccggcttcac cgccgcctac tgggtaaaca 
000721 cacgtgcaac cgtgcattgc atgcatcgtg ttcgactgtt tgttgcacta ttcacacgcc 
000781 tccatgttac aacgtgactc tgacaggtgg gcccgaggct gaagagcgac agggagcggt 
000841 tctcgccgaa caacatcctg ctcatgatcg ccggcggcgg gctgctgtgg ttgggctggg 
000901 ccgggttcaa cggcggcgcg ccgtacgccc ccaacgtcac cgccacggtc gccgtgctca 
000961 acaccaacgt cagcgccgcg acgagcctcc tcacctggac ctgcctcgac gtcatcttct 
001021 tcggcaagcc ctccgtcatc ggcgccgtgc agggtatgat gacggggctc gtctgcatca 
001081 cgcccggcgc cggtaacaaa tctttcgtcc gatcaaaacc acagcacaca cacagttcat 
001141 gggtccaaat cctcacgtac gttttgcatg gacgcagggc tggtgcacac gtggtcagcg 
001201 atgctgatgg gcatgttcgc cggcagcgtc ccgtggttca cgatgatgat cctgcacaag 
001261 aaatccacct tcctcatgaa ggtcgacgac accctcgccg tcttccacac ccacgccgtc 
001321 gccggcatcc tgggcggcgt cctcacgggc ctcctcgcca cgccggagct ctgcgctctc 
001381 gattgcccga tcccgaacat gcgcggcgtc ttctacggca gcggcatcgg ccagctcggg 
001441 aagcagctcg gcggcgcgct gttcgtcacc gtctggaacc tcatcgtcac cagcgccatt 
001501 ctcctctgca tcggcctctt catcccgctc cgcatgtccg acgaccagct catgatcggc 
001561 gacgacgcgg cgcacgggga ggaggcctac gctctgtggg gggacggtga gaagttcgac 
001621 gtgacgcggc cggagacgac gaggacggga ggtgcaggcg gcgcgggcag ggaggacacc 
001681 atggagcaga ggctgaccaa catgggagcc aggggtgtca ccattcagtt gtagaagacg 
001741 ggaagggtgt gcttgctcgt tccagtgatt ctgatgatgt atggcactga tgtatgttac 
001801 tttcaacgtt tagtgttaat tcggtgatgt aatgctggtg tagtttctgt tattgttaac 
001861 tgaattagtt catcgaaaac atgagaatta tctggtt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK252569 FLbaf156f20 1734 view details
/rice/oryzabase