cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK108225     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0441100 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 21,555,459 -  21,556,599  ( + ) ;   1,141(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,555,459 -  21,556,599 ( + ) ;   1,141 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os08g0441100 Os08t0441100-01 002140F03 111078 002140F03 17705 LOC_Os08g34240.1 AK108225 18519 AP008214.2 255678087 BAF23821.1 113623876 NC_008401.2 297609017 NM_001068442.1 115476621 NP_001061907.1 115476622 Q6Z9F4 CIPK6_ORYSJ


Chromosome: 8 ,  position: 21,555,459 - 21,556,599 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tcaagccgga gaacctgctg ctcgacgagg ccgggaacct caaggtggtc gacttcggcc 
000061 tcagcgcgct cgccgaccac gcccgcgccg acggcctcct ccacacgctc tgcggcacgc 
000121 cggggtacgc cgcgcccgag gtgctccgcg acaagggcta cgacggcgcc aaggccgacc 
000181 tctggtcctg cggcgtcatc ctctacgtgc tcctcgccgg gtccctcccg ttccccgacg 
000241 acaacatcgt caccctgtac cggaaggccc agcgcggcga ctaccggtgc ccggcgtggc 
000301 tgtccaccga cgcgcgccgc ctcatcccca ggctgctcga ccccaacccg accacccgca 
000361 tcagcgtcgc gcagctcgtc gagacgccgt ggttcaagaa gacgtccatc tccaggcctg 
000421 tgagcataga gcttcctccg gcctttgccg atcctgctcc ggctaaggag gaggccgaga 
000481 aggacgagcc ggagacgctg aacgcgttcc acctgatatc actctcggag gggttcgacc 
000541 tctcgccgct gttcgagggg gactcggcca aggggaggcg ggacggtggc atgctgttcg 
000601 cgacgcggga gccagcgagc ggcgtgatct cccgcctcga gggggtggcg gcgcgcggcg 
000661 gcggccggat gcgggtgacc aagagcggcg cccgcggcgt gcgcctggag ggcgcggagc 
000721 gcggcggggc caagggccgc ctcgccgtgg ccgccgacat cttcagcgtg gcgccctccg 
000781 tcctcgtcgt cgacgtcaag aaggacggcg gcgacacgct cgagtaccgc tcattctgca 
000841 gcgaggagct ccggccggcg ctccaggaca tcgtctgggg cgccgccgcc gacccaacgc 
000901 cgaccgccgc cgtctgatgc caccattgtt agcgtccaaa gtcattgtgt cacagtagcc 
000961 gatgctgttc ttcctcctcc tgtgcttgat tcgatagcga cgtgcatgaa ctagtatcgc 
001021 tgtttgggtg gtgggggcag ttggcaagaa caaatctgta tctctgcctc aaaagcaaca 
001081 gcattttttt ttcttttgca caagttgcaa ttgtttttgt gatggtcttt gcttacatct 
001141 g

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ568391 rwhms1m18 459
more... (Total Hit Count: 2 )
/rice/oryzabase