cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK106769     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0442400 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 21,652,099 -  21,656,494  ( + ) ;   4,396(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,652,099 -  21,652,539 ( + ) ;   441 (bp)
Exon 2 Location 21,652,638 -  21,652,720 ( + ) ;   83 (bp)
Exon 3 Location 21,652,864 -  21,652,872 ( + ) ;   9 (bp)
Exon 4 Location 21,652,969 -  21,653,057 ( + ) ;   89 (bp)
Exon 5 Location 21,653,232 -  21,653,305 ( + ) ;   74 (bp)
Exon 6 Location 21,653,511 -  21,653,561 ( + ) ;   51 (bp)
Exon 7 Location 21,653,653 -  21,653,729 ( + ) ;   77 (bp)
Exon 8 Location 21,655,453 -  21,656,494 ( + ) ;   1,042 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os08g0442400 Os08t0442400-01 002115F07 109620 002115F07 16499 LOC_Os08g34360.1 AK106769 28649 AP008214.2 255678087 BAF23831.1 113623886 NC_008401.2 297609017 NM_001068452.1 115476641 NP_001061917.1 115476642


Chromosome: 8 ,  position: 21,652,099 - 21,656,494 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aaggctagcc gcctcactcc ctctctctgt ttcctcttct tcttcttcct cccgccggtc 
000061 agctcagctc gcctcgtctc ctccattttg gcgacgcgag cgagcatatt aaagctgtgc 
000121 cggcggctgc aactttgccg ccatttattt agctccggct cttttaaaag ctctcttctc 
000181 ctgctgccat cttcttctgg ttggcaccac cattccatat ataccatctc cctcctcctc 
000241 ccgcgctcgc tcttcgccaa tggccaagcg acgcagcaac ggcgagaccg ccgccgcgag 
000301 cagcgacgac tctagctccg gcgtctgcgg cggcggcggc ggcggtgagg ttgagccgag 
000361 gcggcggcag aagcggccgc ggaggagcgc cccgcgggat tgcccctccc agcgcagctc 
000421 cgcgttccgc ggcgtcacac ggtgcgtgcg ttggctggcc ggattttctc accggcgtac 
000481 gttcgccgca ctgggctgac agcgtttgtg gtttggattt tttttttttt ggcgcgcagg 
000541 caccggtgga cggggcggtt cgaggcgcat ctctgggaca agaacacctg gaacgagtcg 
000601 cagagcaaga agggcagaca aggtatcatc accaatcact ccattaatcc accttatagt 
000661 tgcatccctc gagctgctcg tcagacaatt tgctcattct gatttcgctg cgttctctct 
000721 tgttgctctg attttgcgat cggattggcg tggccggacg aacagtttac ctcggtgagc 
000781 tcccaatctg aacattctga aaccaaaatc catggccacg cagaaggatt gtttgctgac 
000841 cacctcactg tctgtgcgcc ggcgttgcag gggcttacga cggcgaggaa gcggcggcgc 
000901 gcgcctacga cctcgccgca ttgaagtact ggggccacga caccgtcctc aacttccctg 
000961 tacgtggcat acgcctctcc aaaaatccat ggcatctttc tctgaactga atcctctgca 
001021 caagcgttct tcggaaccct tcaagaaatg cacgcacagt gcagcttgtt tgattctgtt 
001081 tggttttctg aggaagattg ttgctgtttt tctcatgttg gaactctctg cagctgtcaa 
001141 catatgacga ggaattgaag gaaatggagg ggcagtccag ggaagagtac atcggatcgc 
001201 tccggaggta aatattcagt taaccccatg ttaccactga ctttcaacaa agagaagtta 
001261 attcagatca ttacaaactt tcagaaaaat ccaaatcaaa acccattgaa atatgcttct 
001321 ctgatcagac atagtgaaat attcatgtct gagaagctgt gttttgaagt agttcttctt 
001381 gattaagatc ataaaccttt ttcaccctgc aggaagagca gtggcttctc aagaggggtg 
001441 tccaagtaca gaggagttgc aaggtagtta atcagtacta atctacactg aaggttccag 
001501 ttttctactg aacattgcta gtagaatcag ttaattaaca gctgttttat tcaggcatca 
001561 tcacaacggc aaatgggagg ctcggattgg gcgtgtgttc ggcaacaaat acctctacct 
001621 aggtacttat ggtaagtagt ttgtgacttt gttatatatg tatgcattaa aatgttctta 
001681 aactggtaat cagtcatcta tcttgcgggt aaaaagcttt gaaatagtat aaattttaca 
001741 atggaataga ttcttcttat ctgagtcagc ttgcgttatc aaaaaggtag ccattgggtg 
001801 tcgttgttag ataggtgaca cctgttagtt gcaaaggaaa cagagaattt tttagacaca 
001861 tccaagaaca ttgctgatgt gttggcttca agacttcaga caagtagaac ctaactacta 
001921 actactcctt tgcaaagacg aaaaggcact tggtgaagta aagatgaaaa ggcacattag 
001981 agatagtttg gaaagaatgt cactgaattc aaaagagctt tcaaactatg gctatccaaa 
002041 ctaggattcg aagaaattga ataggataaa gttcatgatc tttgggataa gattcgccga 
002101 gttatgtttg aagcagccga tggccatact ctggtagggc cagttcatct gaatgccaca 
002161 gaaatgtttc cgtacgctgt agctaaaagc cgaccgatgc ggtccagctc tgactaggat 
002221 ggacgacctt tgtttgattt tgtgcgcaac tatgtgcaaa atttccagca tgaactgaat 
002281 tgacgatttt agacctgttt cctttcgtca ataattcata aatcaccatg gcatccgtat 
002341 gaattggcca ccaactgttg tgtctagttg ctgcagaaac cggtggcatg atgtgccgtg 
002401 catctgcaca aattcaaatc agttttatta gctaaccgta acgttgcctc tttgtcacat 
002461 ctgtacaaca atacaaggga cgtgcaatcc agaaaaaaaa aaagtccaca acgaccggta 
002521 tgttgaacaa gtcggtatat gtggattatt tgcttcacac ttcttttaaa aaatgtggtg 
002581 catttcttct tggttcactt gctataagtt acttactctg tcctaaaata aatcaatcta 
002641 ggtgacgatc tgacacaatc acacaatctc tttgtccaga ttcattgtac cacctagatt 
002701 ggtttattct ttatgtatta tgtatttatt aggtttatta tatataatat ttaagttttc 
002761 gtataatcaa gtagataatc tatcaacata catatgcgag caatatgttt gaaacactaa 
002821 ttctaaaagt acactttgaa gtcaaggacg gaggcaggag tttgctaagc ctaaggctca 
002881 acaaatgtaa cttgttagat tttcaaaatt ttcaattttt tttggatgaa tttaaatggg 
002941 attgatttag caagcgcact ttatagtcgt tatattccct cctgtccgtg gggcccacag 
003001 acagacaggc accaagcagt ggcaactggc aaggccactg gttcactggg cctggacgca 
003061 ggcaggatgg caggagacag gagtcccagg cagccacacg ccacagtgac ccactcccac 
003121 acccaactca gcaatgcaca gccacaaaac caaaccacgc tctttctttc ttcttcttct 
003181 tttttttttc cttttctttt ctcttttttt gcgggagaaa cctcgctcat ctcatctaag 
003241 ccaccatctt gtttttttct gaacgaaatt taccatttca tatggatttc ctctgctatg 
003301 ttttttttat ttgttcatgg ctcacggtgc tcttttttcc gtacgatctg tcagcaacac 
003361 aagaggaggc ggccgtggcg tacgacatcg cggcgatcga gcaccgcggc ctcaacgccg 
003421 tcaccaactt cgacatcaat ctctacatca ggtggtacca cggctcttgc cgctccagca 
003481 gcgccgccgc cgccaccacc atcgaagacg atgatttcgc cgaagccatc gccgccgcgt 
003541 tgcaaggcgt cgacgagcag ccgtcgtcgt cgccggcgac gacgcgccag ctgcaaaccg 
003601 cggacgacga cgacgacgac ctcgtggcgc agctcccgcc ccagctgagg ccgctggctc 
003661 gcgcggcgtc cacctccccg atcggactgc tgctgcggtc gcccaagttc aaggagatca 
003721 tcgagcaggc ggcggccgcg gcggcgtcgt cctctggtag cagcagtagc agcagcacag 
003781 actcaccttc ttcttcgtcg tcgtcatcgc tgtcgccgtc gccattgcca tcgccgccgc 
003841 cgcagcagca gccaaccgta ccgaaggacg accagtacaa cgtcgacatg tcgtcggtgg 
003901 cggcggcgag gtgcagcttc ccggacgacg tgcagacgta cttcgggctg gacgacgacg 
003961 gcttcgggta cccggaggtg gacacgttct tgttcgggga tttgggcgcg tacgcggcgc 
004021 ccatgtttca gttcgagctc gacgtctgaa ctctcaactc cgaccagggt gtttcgggag 
004081 gcccacaatc ccagcctgtt cccgtagatg ggctggaaag atcgaatcaa atttgggcct 
004141 attcagggga tgggctggga gaattgatat gggccggcag ggatggccga aagggaaggc 
004201 ctcccaagtt ttggctgtca agaagctaga actgagttct ctctcaaaag agagagagag 
004261 agagaagcta gaactgagga ttagttgctt actcgcaaat actagtagtt tggaggaaga 
004321 gtaaaatatt ggtttatttg ttgcccatct ctgcgaaggg gaatttaccg taataaagag 
004381 tacatattgc cgtttt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ645561 whei20h12 557
more... (Total Hit Count: 2 )
/rice/oryzabase