cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK105258     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0207500 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 6,266,828 -  6,269,909  ( + ) ;   3,082(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 6,266,828 -  6,267,596 ( + ) ;   769 (bp)
Exon 2 Location 6,268,123 -  6,268,272 ( + ) ;   150 (bp)
Exon 3 Location 6,269,107 -  6,269,909 ( + ) ;   803 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os08g0207500 Os08t0207500-01 001114G07 108106 001114G07 15722 LOC_Os08g10630.1 AK105258 23861 AP008214.2 255678087 BAF23159.1 113623214 NC_008401.2 297609017 NM_001067780.1 115475296 NP_001061245.1 115475297 Q6ZJ91 ZIP4_ORYSJ


Chromosome: 8 ,  position: 6,266,828 - 6,269,909 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cccctcctcc ccacacgcca cccgcacgcg cgccatggac gccatgaggc agagcacgcc 
000061 gcgggccatg ctgctcctgt gcgccgtgct gatgctggcc gtggcgccgc cgggcgcggc 
000121 gacggcggcg gcggtggccg ggtgcgagtg cggtaatgcg gcggcggcgg cggtggcggg 
000181 ggaggacgcg cgcggggcgt tgcggctcaa gctcgtcgcc atcgcgtcca tcctggcggc 
000241 gggcgcggcg ggggtgctgg tgcccgtgct ggggaggtcg ttcgccgcgc tccggcccga 
000301 cggcgacgtg ttcttcgccg tcaaggcgtt cgcggcgggc gtcatcctcg ccaccggcat 
000361 ggtgcacatc ctccccgccg cgttcgacgc gctcgcttcg ccgtgcggcg gaggcagggg 
000421 cggcggaggc gggttcccgt tcgccgggct cgtcgccatg gccgcggcca tggccaccat 
000481 gatgatcgac tccgtcgccg ccgggtacta ccgccggtcc cacttcaaga agccgcgccc 
000541 cgtcgacgac cccgccgacg ccgcgcgcgc cgccggggtc gaggagggcg gcgccgagca 
000601 cgccggccac gtccacgtgc acacgcacgc cacgcacggc cacgcccatg gccacgtgca 
000661 ctcgcacggc cacggccacg gccacagcca cggcagcgcg ccggcggccg ccacctcgcc 
000721 ggaggatgcc tccgtcgccg aaacaatccg gcacagggtt gtctcccagg tgagctcatc 
000781 accaaccgtc aagctcaatc tcgttacgca catcacaaaa caaaatacag taaaaatcaa 
000841 aaataaaaaa tttgggcggt tcaaatgaaa gttccaattt gggatacttt ataaagatga 
000901 ctggtactag tgtactacca attgctttac tttgccacca tccatttcaa atgtccctct 
000961 cctttatgca acaatcacaa gggaacatag atagagatgc atagtggtat tctacactac 
001021 acaaattagc tgattttgat gggagaaagg catgtctctt tctcttttgt aagagataat 
001081 tcaaatactg acaagaagat caatcctttg tattgtaact atctgaggtg tctgcccact 
001141 ctgcaattgg ggataaatct tctctgctca gcctcacaac tgaaccccct ttgcagattc 
001201 tgcacccaac attgcaaatg ttgtaatgtc tgaatgaacc aagctttggt gctacttttc 
001261 gaagaataac tgacaaaaga attgtgattg tgcaggttct ggagctggga atcctggtgc 
001321 actcggtgat catcggggtt tcgctaggcg catcactgag gccgtcgtca atcaggccac 
001381 tcgtcggagc cctcagcttc caccagttct ttgaaggcat tggccttggt ggctgcattg 
001441 ttcaggtata tcacaataac attttacagc catgattaac atgaacatct cacattacat 
001501 tcataccgcg gtataagata atcgacaatt cgacatagaa gggttgaaac tatagctgtg 
001561 cgcttgttta cctacattgt tacatggcaa attgataaaa tatctacacg tgaaaatcag 
001621 gtaaaaggca cctgggctca tgacagaaac agaagggcat gctccattag caaaagcgtg 
001681 cgaaaaacga catatagagt atagacagag atatttatag ctcaaatgat agaacttatc 
001741 actagctaca cgactatact gtacaaagca aacttgaagt aggaccatca ataattgatt 
001801 ccgttccact atggttcaga aatccttcac taactgacaa gctcaaacaa gctcccagct 
001861 tctcaatgcc agtttttttt ttcaggatac acaaacagga attgctgcgt cattttttgc 
001921 ccttctgttt tcccagatgc ttttaaaact ggacttcaga tttagcatat acctaaaaat 
001981 accgcgtttt cagaaatggg ttgagactgg tttgtcatgt aacactggcc aggattctca 
002041 accattttca attgttatca gtatactgta tccactatcc agtgctgatc aatatccacg 
002101 cagatattac tatgtctgag aagaaccaca atttcagcag tttactttag ttcattcaat 
002161 taggtgaaaa tccattccac cataagctac tttccataaa aatgaaaaag ggacagactt 
002221 taaagtttct cgtatgagac aataatttga catactttgt gtcacatttt cttacacagg 
002281 caaattttaa ggcgaaagca acagtgatca tggcgacttt cttctccctc actgctccgg 
002341 tgggcattgc actggggatc gcaatctcat ccagctatag caagcacagc tcgaccgcac 
002401 ttgtcgtcga gggagtcttc aactctgctg cagcagggat actgatctac atgtccctgg 
002461 tcgatctcct cgctgcagat ttcaacaatc cgaagcttca aacaaacaca aagcttcagc 
002521 tggcagtata cctcgccctc ttcctcggcg ctgggatgat gtctctgctt gccatatggg 
002581 catgagatct tcagagcaac caagagctgc aaatttttga atattgtctc tgaaaaagac 
002641 accctgagct tagtttgtag ctgacagggt ttgatgttgt catagcatta ctgcaaccag 
002701 cttttgtaga atctccatca accagaattg gagaaaaaga tggcctgaat acgaccgaaa 
002761 gtttagagtt tactgacatg agtacacaag tcaaaagttc aggacaaatc tgattcttgg 
002821 gcaaatggtg tgcttccacc agtatagcac caaatgaagt gaacaagaat caaatgggtt 
002881 agtcgaggta gtggtccttg aacagatttt ctcttcaagt ccaaaagctt tgtataaaaa 
002941 tgatgacctc cttttggagt caatgtcaat gtacagattc tcagctaggg taaatccttt 
003001 ttgtatgaca agagctctgt gaagtttgtt cacttgttca gtgaagaatc aaataatccc 
003061 cagcgttgtc tcctttttct ct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ567058 rwhms15o04 605
more... (Total Hit Count: 2 )
/rice/oryzabase