cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100106     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0506700 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 25,177,528 -  25,180,378  ( + ) ;   2,851(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,177,528 -  25,178,491 ( + ) ;   964 (bp)
Exon 2 Location 25,178,655 -  25,179,007 ( + ) ;   353 (bp)
Exon 3 Location 25,179,093 -  25,179,254 ( + ) ;   162 (bp)
Exon 4 Location 25,179,387 -  25,179,452 ( + ) ;   66 (bp)
Exon 5 Location 25,179,636 -  25,179,704 ( + ) ;   69 (bp)
Exon 6 Location 25,179,962 -  25,180,378 ( + ) ;   417 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os08g0506700 Os08t0506700-01 J023004M08 210942 J023004M08 13632 LOC_Os08g39630.1 AK100106 6134 AP008214.2 255678087 BAF24104.1 113624159 NC_008401.2 297609017 NM_001068725.1 115477187 NP_001062190.1 115477188


Chromosome: 8 ,  position: 25,177,528 - 25,180,378 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcatcccccc gcaaaagcaa tccgccgatt aaactaaccc aaaaaaaaaa gaaaaaaaac 
000061 tactcctcct cctcgcccaa ccccgcaaaa gcagcggcga cctcgcgaag ccaagccacc 
000121 accacttctt ccttcgctcg ctcgcgtatt ttcttttgct tttttgtgtg ctcatttcct 
000181 cgccgtaaag aagcgaggag gaggaagcgt agcttgagag gctggagaga tcgatcgaga 
000241 gagcttagca acagcagcaa agtgattgga gttgagcttg tccgtcttga aaagtcgctg 
000301 atcttttctt gtttactttc ttctttttat ttctttcttg tgttgctgaa ttgaggttgt 
000361 gtgggcggcc atggcgagga ggcggagata ggaggtgggt ggttgttgtt gttgtttgat 
000421 ttggtgggtt gaggtgggag aattggagtt ttgttggaga agagaggaga gaaggggatg 
000481 tacggctcgc cggtttccaa ggatctgaac ctcccggtgc agccgccggc gatgagctcg 
000541 tcgggcttgc tgcggtacag atcggcgccg agcacgctgc tcgccgagtt ctgcgacgac 
000601 ttcctcccgc ccgccgccgc gccccgcgcc gccagccccg acgccgacaa cgtcttctcc 
000661 cgcttcctcg ccgaccacca gatccgtgac aagtctcccc ccgccaccgc cgccgccgcc 
000721 gccgctgccg ctcacttccc cgacgacccc accatggcca cccagcacca ccaccagcag 
000781 cagatgatgt tccagcacca cccgcagcag atggcctctg tcgaggggct ctaccgcacc 
000841 gtcagctcca ccgggattga cgccgccacc gccgccgcca acgccgccgg tggcggcggc 
000901 ggcgggctgc tccggcagag tagctcgccc gccggattcc tcaatcattt gaacatggac 
000961 aacggttagt agtactactt ccttaattct ctccttcttt tggtaatggt agttgcacac 
001021 gcctactact tgcttcggca gcagcagcaa ttattactgt tcttgctcga gttcttctcg 
001081 ggaacatttc catttccgga actgagtccc gcactgttcg gtttcagggt acgggagcat 
001141 gctgcgggcg ggcatggcgg cagccggcgg tggggtgggg ttcaggaacg gcgcgaacgc 
001201 cgccgccgcg gccgactccc ccggcggcag cgggggcagg ctgaaggggc agctcagctt 
001261 ctcgtcgcgg cagggctcgc tcatgtcgca gatctcggag atggacagcg aggagctcgg 
001321 tgggagcagc cccgagggcg ccggtggcgg cggcggcggc ggtggccggg gttacctctc 
001381 cgggtacccg atgagctccg ggtgggagga gtcgtcgctc atgtcggaca cgaacatctc 
001441 cggcgtgaag cgccagcgcg actcgtcgga gccgtcccag gttcgattca caaaattccc 
001501 atcgattccg ttgatagatg atttgtacaa gaaactgacg acgacgattt gtggcggtgg 
001561 cgcagaacgg cggcggcggc ggcggcctgg cgcaccagtt cagcctgccg aagacctcgt 
001621 cggagatggc ggccatcgag aagttcctcc agttccagga cgcggtgccc tgcaagatcc 
001681 gcgccaagcg cggctgcgcc acgcacccgc gcagcatcgc cgagcgggta aaaaacaaca 
001741 acaaaattcc tcttcaccct cctcaccgca ccgcacagca caaattcgtt aatatcaaac 
001801 gagcagcagc agccagcagg tgactgatct gatccccgtg atgttgatct ttgccatagg 
001861 tgaggaggac aaggatcagc gagcgaatca ggaagctgca agaactcgtg ccaaacatgg 
001921 acaaggtact gatgagtact acacctctct ctctctctct ctctctctct ctcttcccca 
001981 ataggcaata gaacagtgtt tggttagcaa atagtagcag tagtagcagc aaatctgcaa 
002041 atgtgcagta caaggaccac tccaaaatta acctgtccga aacctgaaac gtttccgttt 
002101 tcctgcagca aaccaacact gctgacatgc tggatttggc tgttgactac atcaaggatc 
002161 ttcagaagca ggtcaaggta agctgattag ctataatctc ccttttaatc ccgcaattaa 
002221 ttagaacgcc atctatatca tctgtagctt gtaattagat tagtcaacct atcctggcca 
002281 ctgaggtcca aatcaacatg gccgctttgc cctgtgactg agggtgaagg gtacttttta 
002341 ttggtcttat ccaaagttac gctgcacaat ccacagatcc agtactgaga tttgacagtt 
002401 actcattgca aattgtcatc tctgttcatc gcagggatta aacgacagcc gagctaactg 
002461 cacctgctca gcgaagcatc agcagtactc tggctagaaa gctttgtaca agtcatggag 
002521 acttcagaaa agaacacaag attgttttgg agattaggca ggactgagac gatctctgaa 
002581 gatgtgtaat ggttaatttc atttgtttgg gggggtttaa ttagagaggc acatggaaga 
002641 aaaggctctt gtgtgccaaa gcactgtata agcaaagggc aatggagcag tggcatcatc 
002701 aggattcaag tgataaaaag aaaaaggaaa aacaagggag aaaaagggtg ggagatgggt 
002761 gaaacaattg tatagttttc ttgtaacttt tgccatatat acccctgcat gccccatgtc 
002821 cagtgcattt tcgatagaaa tttattactg c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV928824 rbasd15m21 616
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ694392 whsc17a16 650
more... (Total Hit Count: 12 )
/rice/oryzabase