Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK101504 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os01g0643300 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 1 |
| RAP - Location, Length | 27,593,398 - 27,597,944 ( + ) ; 4,547(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 27,593,398 - 27,594,867 ( + ) ; 1,470 (bp) |
| Exon 2 | Location | 27,594,970 - 27,595,318 ( + ) ; 349 (bp) |
| Exon 3 | Location | 27,595,992 - 27,596,077 ( + ) ; 86 (bp) |
| Exon 4 | Location | 27,596,215 - 27,596,372 ( + ) ; 158 (bp) |
| Exon 5 | Location | 27,597,462 - 27,597,538 ( + ) ; 77 (bp) |
| Exon 6 | Location | 27,597,629 - 27,597,944 ( + ) ; 316 (bp) |
| Related Rice IDs | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os01g0643300 | Os01t0643300-01 | 212346 | J033044E23 | 12615 | LOC_Os01g45550.1 | AK101504 | 27272 | Q5VP70 | PIN3A_ORYSJ |
| Os01g0643300 | Os01t0643300-01 | 212346 | J033044E23 | 12615 | LOC_Os01g45550.2 | AK101504 | 27272 | Q5VP70 | PIN3A_ORYSJ |
| Os01g0643300 | Os01t0643300-01 | 212346 | J033044E23 | 12615 | LOC_Os01g45550.3 | AK101504 | 27272 | Q5VP70 | PIN3A_ORYSJ |
Chromosome: 1 , position: 27,593,398 - 27,597,944 bp |
|
|
Now loading |
|
|
|
| Sequence (Data source : RAP-DB) | |
|---|---|
|
Nucleotide
Fasta Format |
000001 acatgtgcgc gcatgaacta cgggcttaat ttgcacctcc gagcgaaaca ttgatcgttt 000061 cttatgaagc acacgcccac tggtgggtca gtcacgatcg cgcattcaaa atctctcatg 000121 tttttacagt aaaatccacc ctggagcctg gatgacggga gaatgtagac cgctcctcaa 000181 ctctgtgctc gttggacttg gacgcagcct ataagtggct gaccccgagt tctccgagtt 000241 agcaagaagc cactccactc ggccgctcct gcatgtataa ctagctagtt ctagctcgct 000301 caggcactcg atccaccgcc gggcgcgttg gattgagata ggctgaggag atgatatccg 000361 ggcacgactt ctacacggtg atggcggcgg tggtgccgct gtacgtggcg atgttcctgg 000421 cgtacgggtc ggtgcggtgg tggggcatct tcacgccgga ccagtgctcc ggcatcaacc 000481 gcttcgtcgc catcttcgcc gtgccgctcc tgtccttcca cttcatctcc accaacgacc 000541 cgtacgccat gaacctccgc ttcctggcgg cggacacgct gcagaagctg ctcgtcctgg 000601 cggggctcgc cgcgtggtcg cgcctcccct cgcggaccgg cgcgccgcgg ctggactggt 000661 ccatcacgct cttctccctc tccacgctgc ccaacacgct cgtcatgggg atcccgctgc 000721 tgatcgccat gtacgggcca tactccggct cgctcatggt ccagatcgtc gtgctccagt 000781 gcatcatctg gtacacgctg atgctcttcc tcttcgagtt ccgcgccgcg cggatgctga 000841 tcgccgacca gttcccggac acggcggcgt ccatcgtgtc cctgcacgtc gacccggacg 000901 tggtgtcgct ggagggcggc cacgcggaga cggaggccga ggtggcggcg gacgggcggc 000961 tgcacgtcac cgtgcgccgg tcctcggtgt cgcggcggtc gctgctggtc acgccgcggc 001021 cgtcgaacct gacgggagcg gagatctact cgcttagctc gtcgcggaac ccaaccccgc 001081 ggggctccaa cttcaaccac gccgacttct tcgccatggt cggcggcggg ccaccgcccc 001141 cgacgcccgc tgcggtgcgc ggctcgagct tcggcgcctc cgagctctac tcgctgcaat 001201 cgtcgcgggg cccaaccccg aggcagtcca acttcgacga gcactcggca cggccgccga 001261 aaccaccggc aacgaccacg ggggcactca accacgatgc caaggagctc cacatgttcg 001321 tgtggagctc gagcgcgtct cccgtctcag aagtcagcgg cctgcctgtg ttcagtggcg 001381 gcggcggcgg cggcgctctc gacgtcggcg ccaaggaaat ccacatggtc atccccgccg 001441 acctgccgca gaacaacggc tcaggcaaag gtccgtcccg acattaatgc cgcagtagta 001501 gtactgtcac ttaatcacgg gctccatgtg caactctaaa catagacctt cccaaatttt 001561 ctacattttc agagcacgag gagtacggcg cagtggcatt gggtggcggc ggcggcggag 001621 agaacttcag cttcggaggc ggcaagacgg tggacggcgc cgaggcagta gacgaggagg 001681 cggccttgcc tgacgggctg acgaagatgg ggtcgagctc gacggcggag ctgcacccga 001741 aggtcgtcga cgtcgacgga ccgaacgccg gcggcggcgc cgcgggcgcg gggcagtacc 001801 aaatgccgcc ggcgagcgtg atgacacgcc tcatcctcat aatggtgtgg cgcaagctca 001861 tccgcaaccc caacacttac tccagcctcc tcggcctcgc ctggtccctc gtcgccttcc 001921 ggtacgccgt tttttctttt tccctctctc cgaagattaa cctacctttt tcacgtgacc 001981 tgtgcaatta ctcatttttt ctactgccta agttagttcg ggtgataagg tgatttcact 002041 cgacagagac gacaagttcg gcgaggatcg aggaccgcga tggtgttggt gatgataagc 002101 gcgagagcga tattattctc ggcgaagcca gagggagtgg gtagcgcgta ggcggtaggc 002161 taggaagcac cgaaactgcc cgggggcgta cgtgccgtgg cggtgggaat aaccgaaaag 002221 cagctttttt acggatcccc aaacggcggt ggtgggccga cgaggtgagt gagtttcccg 002281 ccggcacgga ccaccgccgc gggcccggtc ggcaccaatc gcgaactgta ggagctgaaa 002341 aaggcagaat ttgcacggcg cgcgagcact ggtcgtcgtc gagccagtct accaaacaca 002401 gtcacacaat agcgtttcca agcaaggaac catgaacgat tggccccgtt tcctttggag 002461 taacctgcat ctactactac tactaatcat cataagagca cacctgttgt tattttatca 002521 tctctagtgg ctaatgatgt tgatatttac tgttccggga gctaaccaac gggcaatgtg 002581 ttcatgggtc acaggtggca cgtctccatg ccagcaatcg tcgagaagtc catctccatt 002641 ctctcggacg caggcctggg gatggccatg tttagcctgg gtgggtgccc acgccccttg 002701 tgctcatgtc ttcccgtagc cctacaccgc attgctccgc aattaatccc tcttcacacg 002761 cactggtgcc cactggcccg cgctcgagct aacgctgtca aactgtctcg tggccaggat 002821 tgttcatggc gctgcagccc agcatcatcg cgtgtggcaa atcagccgcc gtcgtctcca 002881 tggccgtccg cttcctcgcg ggccctgccg tcatggccgc cgcgtcaatc gccatcggac 002941 tccgcgggac gctcctgcac gtcgccattg ttcaggtaac tatgggttgg tttggtttgt 003001 ggcctaaata catcttacta aattttgtca atactaaatt ttggcaagtt ttagcatgac 003061 taattttggt aaagcaaagt tgtgtttgga ttgaagccaa aatagcctaa gttcactatt 003121 gaaatggcct attttttagg catgccaaaa tttggcttca aaccaaatag acactaaata 003181 ctattgaaat tgataaatat tggtaagcct aatttagatc tcaaaccaaa ccagtcctat 003241 atgcatgcat ctaaaagaag ttactacagt aagcaacccg tgcaaagtga taatttaatt 003301 tctcccttat gccaattata aaatttggta gacaagctta tcatgtgtgg gggcgtttgg 003361 ctttgccagc agcgtataca gggtcggggt tctgatctgt cagaccctgg cttatatact 003421 ctgggcctgt ttggcacagc tccagctcca cccctcctgg agtcaaacag tttcagctcc 003481 actagaactg agctagagct cagtcaaaca gtttcagctc caccagaact gggaatggag 003541 ctgggtagag ttctctcaca aaataaacta gagttgtgga gctaggttta ggcaactcca 003601 caactccact ccagactcaa ctcctggagt taaatttagg agttggagct gtaccaaaca 003661 ggccctccgt atatatgatt ccatcagctt ctttactgga acatatgtac tccctccgtc 003721 ccataatagg tgacgttttt gactttttat ttgcaacgtt tgaccattca ttttatttga 003781 aaaatcagtg caaatataaa aaaaagataa gtcatatgta aagtactttt gataataaag 003841 caaatgacaa acaaaataaa taataatttc aaaatttttt gaataagacg aatgatcaaa 003901 cattgataaa aaaactcaaa aagacaagta atatgggacg gaggtagtac ttactggagt 003961 agtatcaatc attcgagcaa tttatttccc tgtgcattat atactactag tatatgtgaa 004021 gctaatgctc attgatatat atatctggga attcgatttg ataggcggct ctaccacaag 004081 ggattgtgcc ttttgttttt gcaaaagaat acaatgtcca cccggccatc ctgagcacag 004141 cgtaagcaat ttcctttgct tgttttgctt gctgatattt ttgtttggat ggtgtttata 004201 tttattctgg gcaaattgtc actttttaca gggtaatttt tggcatgcta atagctcttc 004261 caatcacatt gctgtactac atccttcttg gactatgatc aagaaagctt atggacgctc 004321 tcacataaaa cggaagaaat gggggcaaag agagagaaaa aaaagcgatc ctgtccatct 004381 caaacagcgt atgcttatat gtatagcctg ttgtcggaca ttgcccatga tgacaagaca 004441 acgaagttgt tacagagcta tatatctctg cgacatttgt acaagagata acgacagaat 004501 gtactcaaat ataaccgata ttagatatgt gttctgttaa agatctc |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| BY841439 | baet58h11 | 303 |
| more... (Total Hit Count: 2 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ826849 | whatlal21j05 | 670 |
| more... (Total Hit Count: 3 ) | ||
