cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK101455     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0100400 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 11,721 -  14,685  ( + ) ;   2,965(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 11,721 -  12,813 ( + ) ;   1,093 (bp)
Exon 2 Location 12,906 -  13,271 ( + ) ;   366 (bp)
Exon 3 Location 13,359 -  13,437 ( + ) ;   79 (bp)
Exon 4 Location 13,969 -  14,171 ( + ) ;   203 (bp)
Exon 5 Location 14,266 -  14,685 ( + ) ;   420 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0100400 Os01t0100400-01 J033040A20 212297 J033040A20 14336 LOC_Os01g01030.1 AK101455 AP008207.2 255672756 BAF03649.1 113531266 NC_008394.4 297598437 NM_001048270.1 115433953 NP_001041735.1 115433954


Chromosome: 1 ,  position: 11,721 - 14,685 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 actcgccgtc accccccacc ttgacctccg cttcgaattc gaattcgaat ccgatggatt 
000061 cgattcgccg tcgatctgcc ggaggcatcc tcggcatcct ctttctggtg ctgctccggt 
000121 gggcgggggc gggggatccc tatgcctact acgagtggga ggtatcgtac gtgtggggtg 
000181 cgccgctggg cggagtgaag aagcaggagg cgattggcat caacgggcag ctgccggggc 
000241 cggcgctgaa cgtgacgacc aactggaacc tggtggtgaa cgtgaggaac ggcctggacg 
000301 agccgctgct gctgacgtgg cacggggtgc agcagcgcaa gagcccctgg caggacggcg 
000361 tgggcggcac aaactgcggc atcccgccgg ggtggaactg gacgtaccag ttccaggtga 
000421 aggaccaggt cggcagcttc ttctacgccc cctccaccgc cctccaccgc gccgccggcg 
000481 gctacggcgc catcaccatc aacaaccgcg acgtcatccc cttgcccttc cccctccccg 
000541 acggcggcga catcaccctc ttcctcgccg actggtacgc cagggaccac agggccctgc 
000601 gccgcgccct cgacgccggc gaccccctcg gcccccccga cggggtgctc atcaacgccc 
000661 tcggccccta ccgctacaac gacaccctcg tcccgccggg cgtcacctac gagcgcatca 
000721 atgtcgaccc ggggaggacc taccgcctgc gcgtccacaa cgtcggcgtc gccaccagcc 
000781 tcaatttcag aatccagggc cacaacctgc tgctcgtcga ggccgagggc tcctacactt 
000841 cacagcagaa ctacaccaac atggacatcc atgtcggcca gtcctactcc ttccttctca 
000901 ccatggacca gaacgcctcc accgactact acgtcgtcgc cagcgcccgt ttcgtccccg 
000961 acgccgacaa gctcaccggc gtcgccatcc tccactactc caactcccag ggcccgccct 
001021 ctggctctct ccctgatgcc ccagatgacc agtacgacac cgctttctcc atcaaccaag 
001081 caagatcaat caggtcagta gcctgcattg ccattactgc tcatccattc attcatcggt 
001141 cctactcact ctcattgact ctctctctct ctcacacaca cccagatgga atgttacagc 
001201 cagtggtgcc cgccccaatc cgcagggctc attccattac ggcgacatta ccgtcaccga 
001261 tgtgtacctg ctgcagagca tgccaccgga gctcatagac ggccagatgc gtgctactct 
001321 caatggaatt tcttatattg ctccatcgac tcctttgatg ctcgctcagc tctttaatgt 
001381 cccgggagtc tacaaactgg attttcctaa tcgtcctatg aacaggttac caaagcttga 
001441 cacctccatt atcaatggca cctacaaagg ctttatggag atcatattcc aaaacaacgc 
001501 cacatccgtg cagagctacc acttggatgg atatgcattc tttgttgttg ggtaaaagct 
001561 tgcagcactc cccctttccc ctgccctgga tgtactactt atttacttat atatggatat 
001621 ggtggttact tctctcagga tggactatgg actgtggaca gacaacagcc gcggtacata 
001681 caacaaatgg gatggcgttg cacgctccac aattcaggtg ctcaaaattt tcatgtctcc 
001741 cattgctttc tatggatgcc ggtttttaac tatgacacct ggtagctagt ctgctgcctg 
001801 aaacccaaag aaactagtac tgtgctatta catctgttac ttgatggaga tggaagttag 
001861 cagccgatat gtgggactcg tactatgtag taacagagcg gcacggtgca ccttcttgta 
001921 gaaaaatcat gtatgtcttt ctatgggggt ggttagtttt ttgaggggat gttgtcatat 
001981 atccatatca ttcagatatg gagtggctaa ttatgtggtc aaccaatgat tcctttgggc 
002041 atggcagttt tgatggtata gaaaccctca ttgtttgttt ggttagtgat aaacttcatg 
002101 cactggttca aagtttcaga cgactgcatt ttatcttgag aaaaccttcg aattcaggaa 
002161 atactgtctg aaatataacc tactcatgaa ctctatacaa tattctggta cagcctttag 
002221 cttgacatgt ctttgtgcaa gactgcaggt attccctggc gcttggacgg ctgtccttgt 
002281 ctttcttgac aatgcgggta tatggaatct gcgggtggag aacctggacg cctggtacct 
002341 ggggcaagaa gtgtacatca gtgtggttaa cccggaggat agcagcaaca agaccgtgct 
002401 tcctcttccc gacaacgcga ttttctgtgg tgcgctgtca agtttacaaa agtgaggctt 
002461 ctcatgacag cggttttcag tttgcagctc agggatgcct acctgttata taacatgtat 
002521 agcgtttgtt gttgattccg tgcagggagc aatcgcatag attccaatac tcagaagctt 
002581 ctcagataac gcagctgtgg aagatggttt tcttcatggc atggttggcc ctttggtaga 
002641 gcttaattag atctgtctgc tggggtgatc cggagacgag agagctcaga gctggtccca 
002701 aacatggatg agctctcagc tcaagttagt agggtggtga attttgtcag attcgaattg 
002761 gttagattgg acttgagtga tgatcctgtc tgggaagggc aaagagtagg aggaagcatt 
002821 gggaaggcat acacacgctt gacttgattt ggcttgaagt cgagctagca ggttgctcat 
002881 tagccgttgt gtgatatctg aagatcaact tactacccaa acctagactc acagaaacca 
002941 attgattgat atggattaag acctg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ300905 whyd4p07 632
more... (Total Hit Count: 4 )
/rice/oryzabase