cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070541     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0374100 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 17,601,041 -  17,604,063  ( - );   3,023(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 17,601,041 -  17,601,671 ( - );   631 (bp)
Exon 2 Location 17,601,909 -  17,602,025 ( - );   117 (bp)
Exon 3 Location 17,602,128 -  17,602,206 ( - );   79 (bp)
Exon 4 Location 17,602,793 -  17,602,901 ( - );   109 (bp)
Exon 5 Location 17,603,104 -  17,603,216 ( - );   113 (bp)
Exon 6 Location 17,603,920 -  17,604,063 ( - );   144 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os08g0374100 Os08t0374100-01 J023056A05 206347 J023056A05 5692 LOC_Os08g28680.1 AK070541 32831 AP008214.2 255678087 BAF23578.1 113623633 NC_008401.2 297609017 NM_001068199.1 115476135 NP_001061664.1 115476136


Chromosome: 8 ,  position: 17,601,041 - 17,604,063 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gggccttggc gtaaaagaaa gagaaatctc cattctcgtc gtctcctcag ctgcttgcgc 
000061 caagacgagt cgcggctcaa cagggggagg ggcggcgatc tccatccatc cggcgagcag 
000121 agcaggggag gggaggggat cctggtgagc atccatccac atcctgttct ttctgattca 
000181 tctctctctc ccccaccggg actacttttt gtctggaatt tgcttgcgtt cgttcgttaa 
000241 ccctagcttc ttttctagat ctggaagaag ctctttctct taattccaga gccttaacct 
000301 taatacaaat aacagtttgt tgtttgttcc acccaaaagt ttgggggttc aactgaaccc 
000361 cggccatgtc ccaagttgga tccgcccatg tgtcttaagt ggactagagt aatgtaggaa 
000421 atatgctaac tagtatttct ctaatcgcaa aaacgcatat gatatgtttc tgagtgattc 
000481 gtctgtctgc aaatgattat gacccctgac acaccttatg atgcaccaga gcatcctgct 
000541 gtgagtggac aattatcaca attcacgatt tacatatgaa actttatgac atgcatgaat 
000601 tagtcctgtg gatgtctctt gttgatgctt tgcccttgtt ggaaaacttt acttgatctt 
000661 gaattagttt gcatgtgaaa atagtgaata attactttaa gaggccacta acagattatt 
000721 gatatctgta acttggaact ttccgtaagt aactgaactg attttgtgtc acaccctgcc 
000781 catttcatgt gtatgctcct gtagaaaaaa aaaaggtttc tttggataat ttgttcttct 
000841 ttctcaggaa aatgctaaac cttattaaga taaagggtca aaagaaggaa gatgcagcca 
000901 atgcaaatgg aaagcctcct gccaaaaagc aaagtccagg ggagttgcgt cttcacaaag 
000961 gtttgccatt tcataaataa tatagttcac ttgggctatc atttggttta tgcagtgtga 
001021 ttatacttat caagcatttc ctttcctttg tttagtttgc atgagtgtat ctctgcatct 
001081 tactactctc gtatccaatt ggtgcagtat gtgaattttt tattgtcact tctacgttaa 
001141 ctttgttttt tcttgctttc agatattgct gaacttaacc ttcctaagtc gactagaatt 
001201 tcttttccta atggcaagga tgatttgatg aactttgaag ttactattcg acctgatgag 
001261 ggatactatg tgtaagttat tgcaggtgtt acttttacat gtaattttca tttggtggtt 
001321 ctgtgaaata tgttaccaat ttttctgaat tggtgattct acatctacag catccattga 
001381 aatgacattt gaattgtatg caaaataaaa tatgcattct cctcttcctg cattaataag 
001441 tgcattccat gatgtaatga tagttgttag aacaaggaat aacaggagtc atgtgtgtat 
001501 catgaagggc taaataagtt tttctatttg ataggtttcg tatgatattt tacataggaa 
001561 tgcatgcagg ggcattagca gcaaacttaa ctttgccttt gtcttctcaa catatacctg 
001621 ttcttgatta cggtattgca gtaacttgta attattgctt ttgtttttgt ccttttggtt 
001681 tctttattct gcatggggag tatttaccct gtagctactc aaatttgaag aaagtggcag 
001741 aagtggacca tgttttacct ttctcgtttt ctatttcaga taatggtgga acacagccaa 
001801 gtacttatta ttttaatttc aagtgttggt tctaatatgg attttgttat tcttcagagg 
001861 tggtaaattt atttttactt tccaagttcc tcctgcctat cctcatgaac cacccaaagt 
001921 caagtgcaag actaaggtag cgagtctctt cccattgata tagtgctttt tagttcttcc 
001981 caattaaatc ttccagcaaa cctgcttttt ggttctcata attgcaactt gttactaggt 
002041 ctatcatccc aatattgact tggagggaaa tgtctgcctt aacattctgc gtgaagattg 
002101 gaagcctgtc ctgaatgtca acacgattgt atatggcttg aatcttcttt tctcagtaag 
002161 tacagtgatt gcatgtgtga attaaaacca aaaaaaaaag aactgtacat ctctgtggaa 
002221 aaatgatttg tatttcgctc ttttggaata ttttttcacg gttgtatctt cacttctctg 
002281 tacatcattt acccatgaaa agttattttg gtttcgtgaa gcagaaattt ctttaataat 
002341 ttcgttttgt tatttattac cttggtgtct aattttccat catcatgtgc agcaacctaa 
002401 tgatgaggac cctctaaatc atgaggcggc agcagttctt cgagacaacc cagaaaagtt 
002461 tgagagaaat gtccagaggg caatggctgg aggctatgtt ggtgaaaccc acttccctag 
002521 atgtatgtaa ggcctgaaga tggtgatcgg tacctgactt atctgctgct gccatttctc 
002581 ctaccaatgc actatggtaa aagcagtata tgtaaccaag aaggaacttc tctgttatgt 
002641 aacaacagca gttgctagaa agtaagttag tgaggcaatt gaactcacgt tcataacccg 
002701 caatccgaag actctgggtt aacctgttgt ggcaaatgtt ctcttttggc cctcgcgcgc 
002761 atctcagtca ttctgattca taccagtttc tgagatgctt ttgtataatg ccagctagag 
002821 aaaatgctga acagtatgtg tgtgctgcac ttactgcctg ttatgactta tggctaccag 
002881 gaagtaagaa caagttcact aacattgctt aatgtaacat gctaccttgg gtagttgtgt 
002941 tgttcttttt tccaagctct gtaactggaa aagtcttctc cacctaaatg ttctgaaagg 
003001 catttcatgg ctattttaac tgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252436 FLbaf157m11 1030
more... (Total Hit Count: 10 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ826922 whatlal21i12 727
more... (Total Hit Count: 88 )
/rice/oryzabase