cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070510     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0535200 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 26,813,957 -  26,816,799  ( - );   2,843(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 26,813,957 -  26,814,713 ( - );   757 (bp)
Exon 2 Location 26,814,806 -  26,814,925 ( - );   120 (bp)
Exon 3 Location 26,815,020 -  26,815,392 ( - );   373 (bp)
Exon 4 Location 26,815,491 -  26,815,527 ( - );   37 (bp)
Exon 5 Location 26,816,571 -  26,816,799 ( - );   229 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os08g0535200 Os08t0535200-01 206313 J023056B21 5660 LOC_Os08g42350.1 AK070510 4520 AP008214.2 255678087 BAF24268.1 113624323 NC_008401.2 297609017 NM_001068889.1 115477516 NP_001062354.1 115477517 Q6YZF3 SWT11_ORYSJ


Chromosome: 8 ,  position: 26,813,957 - 26,816,799 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acacatgcag ttgtagtagc acttaagcct tcctctctag ctagcatctc ttgtgtcagg 
000061 aagttggaag ggatttctgg ctagtttcta gctggtgtct cctctcctct tcctaacctt 
000121 ctcactgatt aacaccttag agttagttaa taaccttcat caccagtagc aatggcagga 
000181 ggtttcttgt ccatggctaa cccggcggtc accctctccg gtgttgcagg taaagcatgc 
000241 aaccaatgca taatgctcaa acttaatttc atcatcatca tcatcatcat catcttcaca 
000301 gccatgatca tccatggaca aatgcaactg aagatcattt tagttttcat atgctaatga 
000361 tcaaattcag gttaattgct gtttaatttc tccatacact agttgttgtc tgcaccattg 
000421 cattgtgcac agcacacaca cgcttttgat gcttctagga atgcatatct gttcagcagt 
000481 tcacacagtg cagcagggca atgttgttaa aaaatcttct cctttttttt atgtccttgt 
000541 gttcttgagc tttctgtctc cattgatctg cttttttctt gtttacaagt gatgggcaca 
000601 agtcacttcc ctagcttcag ctcatgcatg gagcaggaat ctcacttcaa aagacctagc 
000661 actttttctc tcttcacctt tttgcctcaa cacatgccca gtttctggcc acacaaacat 
000721 aaacacatat actatctagc tgcataattg catcaaatta agcagggttt gtttcagcta 
000781 ggaattccac acataggtca ttaattagta ttgccaactt tctcaacatg catgcactct 
000841 agtactctac ctaagctagc tcccagatta gcttctgcta atttaattcc gatttcttga 
000901 aatggagatc ggttgagcag tgagggaggc gtgcatctgc tcctcttcgt cgctgtcact 
000961 aaacaaaagc agagctagct aggtggtaac aaactgattt gatttttgtc agtaaacaaa 
001021 aatgaccaat taatgaccca tcaaccagtt tcaattctcg atcctaacct agctaacatc 
001081 tctgaaactc tgaaagaaca ttactatctt actgacagtg tatatatatg caaactaaaa 
001141 ttttatttta ttttatccta acctagctaa catatctgca tccgtgtgaa ccagctgaaa 
001201 ctctgaaaga atgttactcc actgatcata tattaattaa cgatgtcgtt ttctgtcttg 
001261 tttcttttgc aggaaacatc atctccttcc tggtgttcct tgcaccagtg tgagtactcc 
001321 attcctactg tcaccatcaa aatctcgaga gaaacatctg aatatctctg acgacgaact 
001381 ggaatttata tctctgaaaa attgcagggc gacgttcttg caggtgtaca agaagaagtc 
001441 gacgggaggg tacagctcgg tgccgtacgt ggtggcgctc ttcagctcgg tgctgtggat 
001501 cttctacgcg ctggtgaaga ccaactcgag gccgctgctg accatcaacg ccttcggctg 
001561 cggcgtcgag gccgcctaca tcgtcctcta cctcgtctac gcgccgcgcc gcgccaggct 
001621 ccgcaccctc gccttcttcc tcctcctcga cgtcgccgcc ttcgccctca tcgtcgtcac 
001681 caccctctac ctcgtcccca agccccacca ggtcaagttc ctcggcagcg tctgcctcgc 
001741 cttctccatg gccgtcttcg tcgcccctct ctccatcatc gtaagcttaa gctctctacc 
001801 ccccctctac atttcactga catcaattgc attatgtagc tgagcatttc tgttgatgat 
001861 gatgatgctt gcagttcaag gtgatcaaga ccaagagcgt cgagttcatg ccgatcgggc 
001921 tctccgtctg cctcacgctc agcgccgtcg cgtggttctg ctacggcctc ttcaccaagg 
001981 acccctacgt catggtgagc tcagctgccg ccattgatag agctgctcga cgacgccatt 
002041 gttgtgaatt gttttgagct gacttgcatt tcttggtgcg atgcagtacc cgaacgtggg 
002101 cggcttcttc ttcagctgcg tgcagatggg gctctacttc tggtaccgga agccgaggaa 
002161 cacggccgtg ctgccgacga cgtccgactc catgtccccg atctccgccg ccgccgccgc 
002221 cacgcagagg gtgatcgagc tccccgccgg cacgcacgcc ttcaccatcc tgtccgtgag 
002281 ccccatcccg atcctcggcg tgcacaaggt cgaggtggtg gccgccgagc aggcggccga 
002341 cggcgtcgcc gccgccgccg ccgccgacaa ggagctgctg cagaacaagc cggaggtgat 
002401 cgagatcacc gccgccgtgt gacgacgact gatctcgacg acgacagatt ctcgctactg 
002461 atgaagaaga cgacgacgat ggccggatcg atgacggaca gaatttagca gtgtggatta 
002521 ctaccgaact ttaattagtt ggttaattat tggattacaa tgtggtaaga gtgtgtcatt 
002581 agcagctagt taacttactt aaattaatta tcttgttcag tcagtcagtc agtcagtcag 
002641 tcagtcagct ttgagtgagt gagtgagtga tctcgacgta gtttgctggt tggtgtaata 
002701 agaaaaaggc gatctactag tagtctacta gctagtacgc atgcatgtgt gtgtgctcta 
002761 cttaccgtgt tgcaatctca tctctttgta cttacaactc agaaatcaat ggaagattgt 
002821 gacaggtatt attagtagtt act

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ684396 whpc16n18 732
more... (Total Hit Count: 31 )
/rice/oryzabase