cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070120     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0113100 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 700,252 -  702,992  ( + ) ;   2,741(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 700,252 -  700,551 ( + ) ;   300 (bp)
Exon 2 Location 701,796 -  702,458 ( + ) ;   663 (bp)
Exon 3 Location 702,535 -  702,992 ( + ) ;   458 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os08g0113100 Os08t0113100-01 205891 J023041C07 5303 LOC_Os08g02120.1 AK070120 15745 AP008214.2 255678087 BAF22751.1 113622806 NC_008401.2 297609017 NM_001067372.1 115474480 NP_001060837.1 115474481 Q0J8G4 SCRK2_ORYSJ


Chromosome: 8 ,  position: 700,252 - 702,992 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcgcttctc atcgcaaatc gcatcgactt cgattcgctt cgtttcgttc tcgctgttga 
000061 tttgttcgtg agatttgaat tctagcaatg gctcctctcg gtgacggagc ggcggcggcg 
000121 gcggcggcgg agcccaacct ggtggtgtcg ttcggggaga tgctgatcga cttcgtcccc 
000181 gacgtcgccg gcgtctcgct ggccgagtcc ggcggcttcg tcaaggctcc cggcggcgcc 
000241 cccgccaacg tcgcctgcgc catctccaag ctcggtggct cctccgcctt cgtcggcaag 
000301 gtaacaagca acgcctccgc tctctcactt acgtagtaga tctgatctgc catgtcggtg 
000361 tgggcgtcgt cgtcgtcgtc gtcgccggcg gcgaggttgg tcgccggcga gatagatccg 
000421 gcgggtgtgg ggtttggtaa ggttagatcc gggcgtggat ctcgccgccc cgatggatcg 
000481 gcgggatggg gggatctggg ccgtcggatc ggggatggac gggtgggatt aggcgttgaa 
000541 ttgtgcagga atgatttggt tcgctcacgc ttgcttggct cggaaaagga agttctcgtg 
000601 ggcttcgtgc gcgcgagcta ttttgtcgtc acgtgacatc acctcactcc tcactctcgt 
000661 gctgtattga gctgtgctgt gcttagctat ttttgttttt ttccctcctg ttttgtcttt 
000721 tggttaaatt taccctttaa actgtttatt cttagtatgg attaaatttc tgagaattaa 
000781 aataatgtga ttttatattt gtactttaat taattatttt acttttgatt ttggaaatgc 
000841 ttagagtaga ttagtcttta tctgtgtgcg ttaaaggtgg tttctttcgg ccgagttggc 
000901 ccttgggatc acgtgcagtt attaagctgt acagtggcgc acattatcta gttgaattat 
000961 tttttttact ggtactatta tttgtttatt aaatttattt acacgcatgg aacctgacga 
001021 tgttggtgct gacaccgtgg gccccactct ctgtgcacac tgtcgattgg cccagctgag 
001081 tcggatctga cagcgacgcg tcgactcgtg cccgttttgg gtgcgagtgg gccatcggat 
001141 ccaataaccc gataccgagt atctgccact gaatactctc tgttgctgtt tgccactaca 
001201 agtatcgtgg atagttttat tctctttttt tatcgaaagg aatcaatcac ctttaattta 
001261 aaaatgaata atatttctaa ttctttcact tattattact gcaatcaaat tgaaaaatct 
001321 tcctgtgtta tttccgatca tatgtctcga agctgcctct ttcattgatc tgaagataaa 
001381 tattcatctt ttgctaatcg ctaaattcag atcaaatgca gttcttgaat cctgattaac 
001441 acatgttggc ctgatgtgat tgcatctttc attaatctat ctttcatcaa aagcattgca 
001501 tattctcaat gtctaaaaaa tatttgtttt cttctgtgtt gcagtttggt gatgatgagt 
001561 tcgggcacat gctggtggac atcctgaaga agaacggggt gaacgcggag gggtgcctgt 
001621 tcgacgagca cgcgcgcacg gcgctggcgt tcgtgacctt gaaaagcaac ggcgagcgcg 
001681 agttcatgtt ctaccggaac ccgagcgccg acatgctcct gacggaggcg gagctcaacc 
001741 tggacctgat ccggcgcgcc aagatcttcc actacggctc catctccctc atcaccgagc 
001801 cgtgccgctc cgcccacgtc gccgccatgc gcgccgccaa gtcggccggc atcctctgct 
001861 cctacgaccc caacgtccgc ctcccgctct ggccgtccga ggacgccgcc cgcgccggca 
001921 tcctctccat ctggaaggag gccgacttca tcaaggtgag cgacgacgag gtcgccttcc 
001981 tcacccaggg cgacgccaac gacgagaaga acgtgctctc gctctggttc gacggcctca 
002041 agctcctcat cgtcaccgac ggcgagaagg gatgcaggta cttcaccaag gacttcaagg 
002101 gctccgtccc cggcttctcc gtcaacaccg tcgacaccac cggcgccggc gacgccttcg 
002161 tcggctccct cctcgtcaac gtcgccaagg acgactccat cttccacgta atctcaatct 
002221 ttcatcgcca ttgattcttg ctgctagtaa atactgtact aatcatgtga ttgatgtgat 
002281 cagaacgagg agaagctgag ggaggcgctc aagttctcga acgcgtgcgg agccatctgc 
002341 accaccaaga agggtgccat cccggcgctg cccaccgtcg ccgtcgcgca ggagctcatc 
002401 agcaaggcag ccaactagag ctcctcggtt tcgtcgtcga tcgccgccat tgggggcctc 
002461 ggaattttag gtcgatttaa tttagttgct gcttcgtttt agacaaggaa gaggaggggc 
002521 ttgggtgtgt tcatgtctgt cttttgtgtg ctaagttagt tgcttccgtg tgagaacttt 
002581 tggcgtttat ttttactatt attattaata agaagctctt ggatttgcgg tggatatttt 
002641 ggtctgaatt tgtgtaatga ggcagctact tggcgaaatt tattgtgtca tgtctttgtt 
002701 cagaggaaaa gaaaatcttt tcgtgtgctc tgtttcaaat c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250248 FLbaf67p09 1369
more... (Total Hit Count: 22 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ655305 whgc20j11 721
more... (Total Hit Count: 99 )
/rice/oryzabase