cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK067119     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0539300 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 27,036,606 -  27,041,322  ( + ) ;   4,717(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,036,606 -  27,036,878 ( + ) ;   273 (bp)
Exon 2 Location 27,037,989 -  27,038,152 ( + ) ;   164 (bp)
Exon 3 Location 27,038,407 -  27,038,465 ( + ) ;   59 (bp)
Exon 4 Location 27,039,733 -  27,039,758 ( + ) ;   26 (bp)
Exon 5 Location 27,039,843 -  27,040,209 ( + ) ;   367 (bp)
Exon 6 Location 27,040,533 -  27,041,322 ( + ) ;   790 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os08g0539300 Os08t0539300-01 J013095B01 202614 J013095B01 2441 LOC_Os08g42640.1 AK067119 34402 AP008214.2 255678087 BAF24290.1 113624345 NC_008401.2 297609017 NM_001068911.1 115477560 NP_001062376.1 115477561


Chromosome: 8 ,  position: 27,036,606 - 27,041,322 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cccttccttc cttcctttgg acacacctcc ccatttccct ccctctctcc tcttccacga 
000061 gctcacctct cctctcctct cctctcctct cccgcgagcg agcgagagag aggcaggcgg 
000121 tgatggatct ggagaggtcg ccgccgccgc cgccgcccga gggaggagga ggaggaggag 
000181 gaggaggcgc gtcgtgctcc atctgcctgg atccggtggt ggccgggggc aggtccgtcg 
000241 ccaggctgca atgcgggcac gagttccacc taggtcagat tctcccccgc tcccgctccc 
000301 gcgctctccc cgggcacgca cgtttctgga ccggatctgt gggagaacgg gcggggttgg 
000361 ctcaattctc acggagggtg gtttgacgta gatgcgaaat ttgagtggtt attagaattt 
000421 ttaattgtag ctagggtgat cggtgtggtt gaattcgcgg agagctgcag atgtgatgtg 
000481 tggagatgga gtggaatgag aggaaaaaag aaaaagaaaa accataagga ttgcggcatt 
000541 agtcaatcgg taattttaat tttaagcatg gatttgacgc gaatttatgt tggtttactt 
000601 gttcgattcc ttgccgattg atgcgatttg gcagcattgg tgctgggtct attacctata 
000661 gtggcatctc actttctgct cagccagata gtcacttaca gaaacacaca aaagtagcga 
000721 atttgtagcg gtaatacgag atattgttct agctgtaagc ttttggtgct tgctgtttcg 
000781 atttgatcta tggcttctat gtgttatcca tggagtgtat ataaaaataa ggcctcttta 
000841 gtttgctgac cgtgggctgg acatcgcgtg caatgctttc atatggtgca agcaatgctt 
000901 gtatataggg aatagaggga ctagaataag aaggcacata tagaattcgg gcaccagatt 
000961 agaccttttc aagttccatg gctaatctct tgcttttacc atataatgca acgcatacta 
001021 atgcattgtt ctagaatgag cctgatcatc ttcgaactat ggtaacaact acacaccatg 
001081 cggtcatgca aatgaatatg ttatgctcat acaatgtaga gaattgtttg aatttgttgc 
001141 cagctttaaa caaattcaac tttttctgga agcatcatgt aatttatatt ttgtgaaaag 
001201 ccacttataa cttattttgt tttaaattgc tgttgtgtag tttttttttt caaattctgg 
001261 cttgggatcg tttatgagcc aagcatgtat tcatagcctc atctgtgtac atcttcatgc 
001321 atgtataaaa ataaactttg gcgcccttca caggtggtta aactaacatt ttttccctgt 
001381 tagactgcat tggatcggca tttaatgcaa aaggggccat gcaatgccct aattgtcgga 
001441 agattgagaa aggccgctgg ctttacgcaa gtgggcacca tccatctcct gatattgata 
001501 taggtggctg ggtgactggt gaaacctatg acatcacctc agatattgta agtgttcagc 
001561 tgagagttaa tatgcatata gggaaaaaaa ttggcatgcc aattcctgtt caacctttgt 
001621 aaataatgac atttcattac tttgcatatc atatgctctg gagctatttg tcttatgtca 
001681 atgagttgca tgcagccttg catccaattt acccttgcaa aagacaggtt tcagttttgg 
001741 tatgtagaca agtctgacat catttcacct gtctcctgtt tctaattatt ctgtttcaca 
001801 gccatttggt tttcaatggt gcccctttag tggattcacc cagctagcat ctgtatttga 
001861 gtaagcatgt ctcttcttat ctcaatatgt atgggtcatt gtatatgcaa ttaatgattt 
001921 acaagcaaga gcaggtattt ggtcatagta ctaattttag taagagaata ttctgttttg 
001981 tcgtatgtca tgttggtaat taatgttggt gttagttttt taaatagatt atatggtact 
002041 gccttcttga ttgctgcact cgtgtcagtg agcactaaaa taaaggccaa tgccacagga 
002101 tgagtttaac tcatcttcct aaaacgaaga aacctaataa cgtaaataga aatgttggag 
002161 acctggccat gataaacttt tattattaaa atatgtaggt acgacttgat tttgcattga 
002221 tcataagtac tccctccgtc ccataatata gaaacctagt gctggatggg acgtatccta 
002281 gtactacaaa tctaaacaca cctcctatcc agattcatac tactaggacg tcccattcat 
002341 tactaggttt ctatattttg ggtcagggcc tcaggggtag tagttaccaa gtcataaata 
002401 gtaacctgtc aaaaaaaact aaacaggcca ttgatttgat gacaacctgc atggttgtac 
002461 cctgcacaaa atgactactg caccaaccct tgggtcctcg atggtctcat gtctgaagtg 
002521 tccagtgtga ttgggtagag ccaagaagga tttatggact tagttgccaa gcgaactggc 
002581 ccatctcagt attttccatg atgcacaacc cagtaaaggt gtttttcttt caatgcctgt 
002641 tttaccaccc tccgaccttc ctctttctgc ttccatggta gccacctgcc ctgaacagct 
002701 aaggatattt cctggttgtt tggagccaac ctggatccag ctggccaagc atgccccgaa 
002761 gatggttcta ccaatgctat acccaaagca acaagaacaa ccatttcact attcgtaagg 
002821 caactcagtt gttattcacc aagcactttt ttttaatggt cgtctagatt ttgttgtcag 
002881 ttattagatt ttggctcttg tttttttaat gaagtggcag cacaatatat atgtcaagat 
002941 gtttgtcttg tccactgtat ttgtgcatag ccctggttag ttgtaattta ctggagttcc 
003001 tgtgttacaa gatctatgtt gtttgctcta tgatggattg gaatttggaa cctcaggttc 
003061 ttctaaaaga attacgagta tattttaaaa tttcaagttc tgaatttagt tgccacttta 
003121 tttgcaggga gggtgaagct gaacaaactt cttgtaagca tgtctacttg aacttttaac 
003181 atctttgatt tcaattttca atcttgttca ttgctttttt gttttccttt catgaagatc 
003241 atacagttgg agatcattca aatgctgcta gcagttctct tgtttgccct taccttgcac 
003301 tgcgtggttt tctccatcct gtgcatgtcc cttctagttc tagttctggt gccgaaaaca 
003361 gttcatttca tcggcatcca actagcttgg aaggccatgc agcccacgat ttgagcaata 
003421 cacaagtttt ccatgcaaca gagtcaagaa atcatgacaa tgaccaccgc tatatgagca 
003481 atcttcctgt gtcaggcatt cctgatcatt ctgtagctcc atttggtata ggattgccga 
003541 gatatgacag cagcagccaa cagagaacaa ggccatatgc acatcaccgt cccctagttc 
003601 acaggtataa gattatggga acatcataaa acttgttatt tctacattct agacagattc 
003661 aacctattat gttcagaagt acagatgctt cagtacatag atagtgtagt gcctgatgac 
003721 caatgataac ctaagtactt ggctacttgc atatgttatt tataagcact gtaaccagaa 
003781 ttgttggtct gcctgatgat ttccgtaggc tatttctaag gataagaata tagctgatag 
003841 cttggtaatg caactcatgg caatttttct ttaaggtttt gccatcttaa ccaccttgct 
003901 gacctcttgt aatgtttaac actacaggcc cacacctcgc aacggaagca atatggttac 
003961 accattaggg tctgtgccag ctgttatggc tgagactaga ggccatggtc atggtgcgag 
004021 gggacacatg tatcaacagt caatgcactc attgcagagc agcccattcc cccctacatc 
004081 tagaagggtt aggcctaggg ctttaacaat tacatctttc atcgcagcat catcctcagc 
004141 tgagattgga ggacaccatg gctttgctcc tcctgtgaac aggagcaatt cctcggatgg 
004201 tgaggctgtt tctagacctg ttgatcggcc atatgggtgg ggccaggagg gctttacccc 
004261 atttccctgg atcccagctg acggtgaatc tcactggtgg ggcaccttca atcccatgca 
004321 gaaccataca catggaggct ttactcgaag acccaccggg gagcgaatgc cgcagagcca 
004381 cccagatagt ggatatcatt ccatgcatcc tcagaggatg ccgccattct tgtaaaggtt 
004441 atcttcctcg ttgtttgtgt atatctcaaa attagttgga attatttgct ccgagagaaa 
004501 acgatgaatc agatgctatt gtttccaagg aactaaatga tgctgcttct gttgtcggaa 
004561 tttagggttt tctagctggc agccctaggt ttgattaagg gttgtgcttt atcctatctc 
004621 atttgttgca atgggcagaa actatttgga aacataagct taaactgtac caagcagcga 
004681 ttgttgccat tgaacatagt tgtgatgcca ttgatgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV835423 bah33p22 506
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ690891 whrd3e19 688
more... (Total Hit Count: 19 )
/rice/oryzabase