cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK066375     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0300300 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 12,438,731 -  12,444,989  ( + ) ;   6,259(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 12,438,731 -  12,438,925 ( + ) ;   195 (bp)
Exon 2 Location 12,439,440 -  12,439,640 ( + ) ;   201 (bp)
Exon 3 Location 12,439,916 -  12,440,093 ( + ) ;   178 (bp)
Exon 4 Location 12,442,448 -  12,442,710 ( + ) ;   263 (bp)
Exon 5 Location 12,442,843 -  12,443,121 ( + ) ;   279 (bp)
Exon 6 Location 12,443,292 -  12,444,429 ( + ) ;   1,138 (bp)
Exon 7 Location 12,444,550 -  12,444,989 ( + ) ;   440 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os08g0300300 Os08t0300300-01 201799 J013064L19 1704 LOC_Os08g20570.1 AK066375 4499 AP008214.2 255678087 BAF23407.1 113623462 NC_008401.2 297609017 NM_001068028.1 115475793 NP_001061493.1 115475794
Os08g0300300 Os08t0300300-01 201799 J013064L19 1704 LOC_Os08g20570.2 AK066375 4499 AP008214.2 255678087 BAF23407.1 113623462 NC_008401.2 297609017 NM_001068028.1 115475793 NP_001061493.1 115475794


Chromosome: 8 ,  position: 12,438,731 - 12,444,989 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gctcccctcg tctccctctg cggcaagctc tctcatggcg tgcacggctc cacgggagga 
000061 ggacctcctc atggaggaag acgagcaccg gccgcctctc aaccgggccc tgctccaccg 
000121 cagcgccacc aacaacacct cccaggttgc catggtcggc tccaacccct gccccataga 
000181 gagcctcgat tacgagtacg cgccccctct cctctgtggc tctgcctccc tttctctctc 
000241 cgttcgttct tgtcagggac tctggatcct accacctgta tcgtctgatc tttcccaatc 
000301 cttgcttctc catcatgttg aattgttgat tcaatgtcga gatgaaatgc tttttcttat 
000361 ccaatagtgt tccatgattt gcttcttgat tgggatagca tctcaatgtt gctgcctcgt 
000421 ttcgtatggt gatccaattg ctctctgttt attgattcag ctgtcctctc aaggacatgt 
000481 catgttcctg ccacctattg tcttgtcaga aatgtttgta tcttgcttgc ccccacttgc 
000541 attttcatcc acctactcct gcggaggtta tcttactcgc tgcaattacc attccaattt 
000601 gctaatatag taatatacac agctctgtaa cctgttggta atattttcgt cggtttgcga 
000661 caatgctaat tcgttttcct tttctttggg gatttgattt gggttacagg ataatagaga 
000721 acgacctgtt cgatcagaac tggaggtcga gagggaaagc cgaccaggtg cggtacgtgg 
000781 tgctcaagtg gaccttctgc ttcgccatcg gcatcatcac cggcatcgcc ggcttcgtca 
000841 tcaacctcgc cgtcgagaat gtcgccggcc tcaagcacac cgccgtgtcc gccctcatgg 
000901 agtccagcag gttctgctca ttgcctccta ttgccttgtc caagaaaaaa gtaatgttgc 
000961 ttttgctgag tacgacaaat tcactcatgc ttgtctcctg ctttgtctat tattatcccg 
001021 tactcttttt gtccctgatc agatcaattc ttgttcaaat ctgagaatgc tatctgtcaa 
001081 gtgatctaga attctgaacc ctcaaaattg actgaatttt tggaacaaag atcaatttct 
001141 gtctgttact ccgagtctga agtctgaaac tcatgtcgga tgcagctatt ggacagcgtt 
001201 ctggctgttc gccggaacca acctggccct gctgctgttc gcgtcgtcca tcacggcgtt 
001261 cgtgtcgccg gcggccggcg ggtcggggat cccggaggtg aaggcctacc tcaacggcgt 
001321 ggacgcgcca aacatcttct cgctcaggac actcgctgtc aaggtgcgtt cctatcctcc 
001381 tctacagctc agcgcagatt agcacatgag ccactcccaa ttactgtaat tgccagttgt 
001441 gcgactgatt tttttttctc ttcttttttt ggaactgtgt gcctgaatta tccacgggca 
001501 aaagggacat taattcgttc tatattaggc tgtgttcagt tcccttcaaa cttccaaaaa 
001561 ttctgtgttt ggacacatgc atagatcatt aaacgtggac gaaaaaaaac aattacacag 
001621 tttgcataca aattgcgaga cgaatctttt gaccctaact acaccatgat ttgataatgt 
001681 ggagctacaa taaacatttg ctaatgacag attaattagg cttaataaat tcgtcttgca 
001741 gtttatagac gaaatatgta atttattttt gttactaatc tacatttaat actttaaata 
001801 tgtgtccgta tacttaaaaa aaattggcca aagaactaaa cacggcctta gtggtagtac 
001861 tattaggatc aaaagaatag ccgtgatcgt gcaagtttct gccaaaaaat tagtgctaat 
001921 tcttttacga tgaaagggca tgttcttgca gcaaagaatt gttttatgtg tgtggctgtt 
001981 tgttttacat gggcatcatt aataattgag accttgggtg tcctttttat tattgtttgg 
002041 atccactaca tacatcactc atccgtttac tttacctgtt tgctctctat tggggttgac 
002101 agagttataa aatggatcca tgattgatat agaatctcta gatctttatc tcatgaaagt 
002161 gaaatgtaac agcacgactt ccgtttgaat tggaatgcct acaaagtcct caataattga 
002221 tacttatttt gtttttctgt agatttctta aaaccccaat attcataaaa cgagtcaact 
002281 tgttcatttg agcgactgaa atattcctat ctatcaatta tttttttagt aaatttcata 
002341 gaactacaga tacatgggtt aaattatcgc aaaattacat atttaactga tgtatcataa 
002401 aactacagat ttagcgataa atttatccaa aaactataaa tttaataata aaattatcaa 
002461 acaattattg attttgggat ttaaatattt agctctaatt ttatgtttga gttgtaaatg 
002521 cccaaattgt gtgattacat tgatataaaa catgtagttt tgtgataact ttgttactaa 
002581 atgtgtaatt ttgcgatatt ccaccttaaa tctgtagttc tgtgataaat ttaatgttaa 
002641 atatgtagta ttatgaaaca tcatgtcaaa tctgtaggtt tctgataatt tggctaaagt 
002701 agtgaaattc actcttattt tttttagaaa aagaattatt gggtcattag acaaaatcca 
002761 tatgttaaaa aaaagagaaa ttttatggtt cttaagaaag cacttgtaga catcaaaatt 
002821 ttacataaaa gttaagtgta atacctagta tctggagata tcaagtttta cacttagaaa 
002881 aatatgttat ctcctaatat cttaagggcc cctttgaatc ataggaatga aaaaaacgga 
002941 ggaataggaa aaacataaga ttctgacagg aatgcaagtg taaaagagag gattgcaaaa 
003001 cacaggaaaa acataggaat gactatttga ttgggccata ggaaaaatac aggaatttga 
003061 ggagagataa agactcaaag gattctttcc atgaggttct accttatgtt aaatttcctc 
003121 cgaaacttgc atggaaagag tcattccata ggaatttcat aggatttcat aagatccatt 
003181 cctttaattc aaatggctat ataggaaaaa tttatatagg aatgaactcc tctaaaattc 
003241 ctatgaattt tctttgaatc aaaggggccc taagtatggt aaacttatcc taaagcatac 
003301 attgatcagc tcctaaaaat aaaataataa tgtaccccaa gagtttgcaa gaaatgtgcc 
003361 ggcaatattg gattgttgga attgaatcaa gaccggcagg gtaccacaat atatggcaaa 
003421 cataggattg tgcaaaattt ttaatggcaa attaaacagg tcattcttct tatgcttttg 
003481 tggttagtct aggcaaaggc aatgatgtcc tgtacaactc caggcacaga tatgaaccag 
003541 cgtaacgttc aaatatgggg aaaataaatg gaacatcatg aataataaca aactgaggga 
003601 gtaaaaatac ggtgataata atagggatga ttacacatgt cgaacgttgt gtaactgaca 
003661 aaactggagc attttaagct gaactcccca tatctattct gatttccaac tgtgcagata 
003721 atcggtaaca tcgcggccgt gtcatcctcg ctgcacgtcg gcaaagctgg cccaatggta 
003781 cacacgggcg cgtgcatcgc cgccatcttc ggccagggcg ggtcgcgcaa gtacggcctc 
003841 acctgccgct ggctgcgcta cttcaagaac gaccgcgacc gccgtgatct cgtcaccata 
003901 ggcgccggcg caggtgtcac cgcggctttc cgcgcccccg tcggcggcgt cctgttcgct 
003961 ctcgaatcac tctcgtcatg gtaaaactac ccatcaaatt acacatgaat gatatgcact 
004021 gctgcaattt tctttttctg ttcatcctct gaagcttttg gctgacaact taattacaag 
004081 aatgtataat ttgtggctga taattaatca aggtggcgga gcgcgctgat ctggcggtcg 
004141 ttcttcacga cggcggtggt ggcggtggtg ctgcggatgt tcatcgagct gtgcgcgtcg 
004201 gggaagtgcg ggctgttcgg caagggtggg ctgatcatgt acgacgtcag caccaagttt 
004261 gatgacctca tgacctacca cctcaaggac atccccatcg tcgtcctcat cggcgtgatc 
004321 ggcgccatct tgggcgccct ctacaacttc ctcatgatga aggtcctgcg cgtctacagc 
004381 gtgatcaacg agtatggcta gctagctacg atcattccat atctttgcca atttcacatg 
004441 gcttacttgt tcgttcaatt aattaattat gacatcattt ggaacacatt gaagttgaac 
004501 tgattatatt ctagtgaaaa atccaatcca atccaatgaa attaattttt gaaatgtgca 
004561 ggaggggcaa cgcgcacaag ctgcttctgg cggcggtggt gtccatcctg acgtcgtgct 
004621 gcgtgttcgg cctgccgtgg ctggcgccgt gccggccgtg cccgacagcc ggggcgccgt 
004681 cgccgccgaa cgggacgtgc cattcgctga accgattccg gcggttccac tgcccggcgg 
004741 ggcactacaa cgacttggcc agcctcttcc tcaacatcaa cgacgacgcc atccgcaacc 
004801 tctactccac gggcaccaac gacgtctacc acccgggctc catgctcgcc tttttcgtcg 
004861 cctcctacgc gctcggcgtg ctcagctacg gcgtcgtcgc gccgtcgggg ctgttcgtcc 
004921 ccatcatcct caccggcgcc acctacggcc gcctcgtcgc catgctgctc ggcggccgct 
004981 caggactcga ccacggcctc gtcgccatcc tcggctccgc ctccttcctc ggcggcacgc 
005041 tccggatgac ggtgtccgtg tgcgtcatca tcctggagct caccaacaac ctgctcctcc 
005101 tcccgctcgt catgctcgtg ctgctcatct ccaagaccgt cgccgactcc ttcaactcca 
005161 gcatctacga cctcatcctc aatctcaagg gcctcccgca cctcgacggc cacgccgagc 
005221 cgtacatgcg gcagctcacc gtcggcgacg tggtggccgg gccgctgcgg agcttcaacg 
005281 gcgtcgagaa ggtgggccac atcgtgcaca cgctccggac cacggggcac cacgcgttcc 
005341 cggtggtcga cgagccgccc ttctcgccgg caccggtgct gtacggcctc gtgctgcgcg 
005401 cgcacctgct ggtactgctc aagaagcggg agttcctgac ggcgccggtg cggtgcccca 
005461 aggactacat ggccgggagg ttcgaggcgc aggacttcga caagcgcggg tccgggaagc 
005521 aggacaccat cgccgacgtg gagctgtcgc cggaggagat ggagatgtac gtcgacctgc 
005581 accccttcac caacacgtcg ccgtacacgg tggtggagac catgtcgctg gccaaggcgc 
005641 tcgtcctctt ccgcgaggtc ggcctgcgac acctcctcgt cgtgcccaag tcctgcgacg 
005701 tatgtgaatc gatgtccact actcaaatta ctaacacaca cctgctccaa tccaaattac 
005761 aaattactta accttttgtt ccactgttac aaactctcat tcgaataaga tcgttgcaga 
005821 ggtcgccggt ggtggggatc ctgacgaggc acgacttcat gccggagcac atcctcgggc 
005881 tgcacccggt gctggtggga agccggtgga agcggctccg gtggcagaag ggcgccgtcg 
005941 ccaagaaatt ccggtcgctc ctcgactggc tagccaacga cagcggctga tcgatcgatg 
006001 cagaggagta cattatattg atacacgcac atacattctg gccggacaac gagggatgat 
006061 gatgatggag tgcttgcaca taaatatacg tacatacacg ttggattggt cattgagttt 
006121 ttgtgaattt tgtgcaataa taacagcacc tatacctggt ggtcatgaat gacatagaca 
006181 caatcattca attttctttt cttctttttg cttgtatatt actccctcta ttttatatta 
006241 taagttgttt tgatttttt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY836099 baet07b09 474
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ703785 whv16n14p16 617
more... (Total Hit Count: 12 )
/rice/oryzabase