cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK061111     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0557700 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 27,992,607 -  27,997,515  ( + ) ;   4,909(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,992,607 -  27,992,989 ( + ) ;   383 (bp)
Exon 2 Location 27,993,126 -  27,993,256 ( + ) ;   131 (bp)
Exon 3 Location 27,993,415 -  27,993,483 ( + ) ;   69 (bp)
Exon 4 Location 27,995,106 -  27,995,177 ( + ) ;   72 (bp)
Exon 5 Location 27,996,253 -  27,996,325 ( + ) ;   73 (bp)
Exon 6 Location 27,997,106 -  27,997,515 ( + ) ;   410 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os08g0557700 Os08t0557700-01 006207D05 103519 006207D05 9065 LOC_Os08g44350.1 AK061111 24214 AP008214.2 255678087 BAF24401.1 113624456 NC_008401.2 297609017 NM_001069022.1 115477782 NP_001062487.1 115477783


Chromosome: 8 ,  position: 27,992,607 - 27,997,515 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gctcattcct ttataggaaa gggctgggga aataaaatct aaccaaattt atgcgattat 
000061 tgttccaact ccagctcatg ctcatcaatt caaattaagt agaaattaaa attaaattcc 
000121 aagagcagct cacaacagca caaaagaaaa ttaaaacttg cctttgggaa tccaatgccc 
000181 actcctcccc atataaatca cacccgtcgc atcgctccga ttcccaatcc ccacgcttcc 
000241 attccatcca tctctctcgc tctctcgctt gctcgccccg ccgattcccg atcggagtga 
000301 ggagctcgcc gctgctgctt gccatggcgg ccgccgcgct gaccagccag ctcaacgccc 
000361 tcgtcaacaa catgttcgcc atggtgagtg aggcgcttca cacgctcttt ttacgaattt 
000421 tttgcgccat ttttggcgga attccgggtg tggatgacga gatttttttg gggttccatg 
000481 tgtgatgtta ttgttggatt gtgtgtattg gggagttagg gtttgctgga cgaccagttc 
000541 cagcagctgc agatgctgca ggactccacc gcgccggact tcgtctccga ggtcgtcacg 
000601 ctcttctgcg acgacggcga gcggatcatc tgcgagctct ccaggcagct gtgcgtgtaa 
000661 ctgtttcgct tgcttttgat cggatcgttc gtgttcgtgt tggggattgg cttgattttg 
000721 gtttgggaga tttgattgct gcgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt 
000781 gtgtgtgtgt gtgtgtgtgt gtgtgcaggg agaagccaaa tgtggatttt gacagggtgg 
000841 actcgtatgt gcatcagctc aaggggagca gcgcaaggtg agcttttccc ctgtcctttt 
000901 ctggatatgg aaatttatgt tgttatggat aattattgct gttattgtca cttggcgcac 
000961 gaaattgggt atgagatccc tttcgaatgg gagaatttaa agcgttgtgc gaagcatgta 
001021 gtcaactttg ggaggattgt catatgtttg attattgcat cttttatggc gtagaatctg 
001081 acaaaaatgg tccattccac ccaaagtgat tggacagttc gaagagcagc ggttcacatt 
001141 gttctatcat atgaattgcc cttctgagca atttgggatg ggttgtcgtc cgtttgatag 
001201 ctgtatcatt ctatcatgta gatatgacaa attcagtccc gctcccatgt tgatcagacg 
001261 gttcaaatag tagcattcat attctcctgt tccttgtggt gctccagatc tattcaagga 
001321 ggattgtcat atgcttcatt gttccagcat tccttgacat agatctgaaa acatgcttct 
001381 gttccatcac acttattgaa tggttcgaag aactttcctc cattccaaaa tgacttggtt 
001441 tacacgtgag agtcctatag tttgaaatgc ttcatattta cgaatattgt atctaatttt 
001501 acttagaatt ctattttttg ttatttttca aacccggagt gttatcacat tttagattag 
001561 ttggtcatta aaaggtagac tgctagagaa tatatcatag attagtgaga gaagggtcta 
001621 atggtattcc taagtgtata gaccataaac tacttcacca tggatggtcc ttcagagctt 
001681 ctatgcacca tatgcacaaa cagtagtagg atgacacagc atgtaaaatt cctgtttaaa 
001741 tgcctttttt ttttttcctt ttggtgtagt catggttttg tacctttaca ccttccttcc 
001801 tcgagatccc taatttccct atacccgaag atatcttcct gatggctaca aaagaaaaat 
001861 gtttccattt gagatttgtt tactgaattt tggagatctc cttacttggt catatctgca 
001921 ggtgctatca aattttcttc ttgctccaga tcttaatagt acctagaatt taatcctgct 
001981 ctttatcagt atatcctcag aatgatgttt taaggtacat tttgtaaggg tacactgaac 
002041 ctattcaaac aggttgtctg gagtttatcc agattagatt ttttttcttg aaacagaaat 
002101 ttaaataaga aattgacaaa caaatccttt cgcctattca atttgggttc aggtatattt 
002161 atgtactgga gtgttattct acagaatcaa attatgtatg aaaataactc accatggttc 
002221 ttcatgttag atctccttat atatttagaa ctggaactac caattggcat tcatacacat 
002281 cactacaaat attaaatctt gttgatagta ggcaactcac aagccagacg gaaatgatca 
002341 ataaaaacat gcaaatctga tagtaatatc atcgtcccag aatttctagt aggtcaatga 
002401 taatattgca ttgttgaaga tataatcaaa tttgttgctc gtctttccat taaagcattt 
002461 gaggagcctt cctgactgta tatccttgca tgtttgcagt gttggtgctc agaaagtgaa 
002521 gaacacttgc attcagttcc gtgagttttg ccaacagagg agcagagatg ggttagtacc 
002581 tattaataca gtattcccat ttttttatca tattattgca catatcgtta tatgcatatc 
002641 ttaacgatga tctagtgcac tcttttctta cattttccta ttgttagtgt tttctgtggt 
002701 ataatgttga cgtaatttct tgcattattt tttctattgt aacatatctt catggaaagc 
002761 aacaactggc tgattctact ctgcctgttg acttaggatt gtaattgctc cactccaatt 
002821 tccaagataa tagaatcact ttaaaaggtg tgactaatgt aaactctatg gcaggcatgc 
002881 cttgatttga aatgaaatag tttgattctt atacagaact ggtagatttt tcagtatttt 
002941 tttctttttt gaagaaaggg caaaagcttt gccacttatg tattaataaa gcagaagggc 
003001 catgacaaaa aacatttaca aaagggaaag ggaaaaacag gggatgtgat gctcgcgcac 
003061 cagcccaaaa aacactacac tctgctagtc gattattccc agggttttat ctccttaagc 
003121 ttgaccgcac ctgcctttac ccaggctgag gcttcttctt tgatttttgc tagtagggtc 
003181 attggggtgg ttgcaacatg acggataact cttgcgtttt gcaggttgtc caatatgccc 
003241 ccaaatattt tagcatgcat atttgtagtg gaaccaagtt gttccatcct ctctgtatgt 
003301 tgtgcagcta ttcagtaaag tagggtcatt ttggtttgaa atcctaccaa aatatttgta 
003361 gtgccaattc ttgggcaagt tttggcacta caattttttt ggtagggtag atttatctca 
003421 actccataga tttagcaaaa gttggttcca atccaaatgg ctaccaagta ctactattca 
003481 aggctaccaa atacttggta gggcaggaat tggcctcaaa ccaaaacggc cctaaatcta 
003541 cattatattg atctttatat cttcatttat gtaatagcct aaaataaaat atgttatttt 
003601 tgtgacaatt gtccccttct ttgtgttggg ccttttccat tatcaggtgc ctcaagactt 
003661 tggatttggt gaggactgaa ttctatgatc ttcgtaacaa gtttcaggct atgcttcagg 
003721 tattaccttg cgttcccaaa ttacatccta tactccctgt tgtgttgcac tgagttggag 
003781 tggacatctt aaaagtaagt gattttgtgt aaggtttgga agtgatttgt aaggtttgct 
003841 ttatgattgg aacattaaat tgtagagatg gttggatatg atggaattaa tactgttact 
003901 ttccgtgcaa cacacaaaaa caatcaacaa tgattagtct gtttgctgaa tgaatagcat 
003961 tagtcttttc atgacacata tatgaggtag tacagtggta tagttgctgt gaagcattaa 
004021 atagcatgcg agataatggc agttggcaga agatgaacat ggtatattta tttctttaca 
004081 aagttggttt tttttctttg tcatttccag tgctacattt gtacttaagc ctttacgtgg 
004141 taccacttgg tgtggtaata attatgactt acagatatcg cactcaaaaa ccttgtttgt 
004201 cttataacta ttttatttta tcccatcctt gcgtgtggat atatctatgg gataattcca 
004261 agaggcctag agttgtttgg tccccaactt gtatttttct tctcataata tgggtagacc 
004321 tgatctttta cctccccagt ttggcccttt ctcatttctg aatggaaaat ggtcatttaa 
004381 ttctggcttg catttttcga tttcttgggc tgtcaaatct tactagtctt atgacctgac 
004441 gatgcaaatt taccttaacc atttatagaa ctgatctgtt attttgcttt ccaatgcagc 
004501 tggagcagca aatccaagct tgttacccta aacattaaac tggcgcgaca gtggagctgc 
004561 atgtttacac aactactgtg cctttggagt tgtagaacat gctcgtttag cttttatctt 
004621 ggagtcattt gtttctggga tgtctgtagc tgtttagcaa caagctgatc tagctttggc 
004681 accttcatta ctgagtagtc gctctcagtt tctgtgatgg ggacaaccgt ttccagcaat 
004741 ttgtagtatc tgttgttatc tggtgtctca gctatagttt ttttcggtcg tttagaaatg 
004801 caacagctgt gcaatttcgc gaaaattgca ttttgctggt tgattagggc ggcttgtggt 
004861 atgttgttga gaacaaagcg atacttaata tcgatataat tgctgtttg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ235252 whe15m03 669
more... (Total Hit Count: 6 )
/rice/oryzabase