cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK059682     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os08g0512600 ( IRGSP 1.0 )
RAP - Chromosome No. 8
RAP - Location, Length 25,507,889 -  25,509,727  ( + ) ;   1,839(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,507,889 -  25,508,349 ( + ) ;   461 (bp)
Exon 2 Location 25,508,499 -  25,508,672 ( + ) ;   174 (bp)
Exon 3 Location 25,508,785 -  25,508,878 ( + ) ;   94 (bp)
Exon 4 Location 25,508,968 -  25,509,037 ( + ) ;   70 (bp)
Exon 5 Location 25,509,144 -  25,509,282 ( + ) ;   139 (bp)
Exon 6 Location 25,509,445 -  25,509,727 ( + ) ;   283 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os08g0512600 Os08t0512600-01 101706 001031H09 8127 LOC_Os08g40170.1 AK059682 13866 AP008214.2 255678087 BAF24134.1 113624189 NC_008401.2 297609017 NM_001068755.1 115477247 NP_001062220.1 115477248 Q0J4I1 CKB21_ORYSJ
Os08g0512600 Os08t0512600-01 101706 001031H09 8127 LOC_Os08g40170.2 AK059682 13866 AP008214.2 255678087 BAF24134.1 113624189 NC_008401.2 297609017 NM_001068755.1 115477247 NP_001062220.1 115477248 Q0J4I1 CKB21_ORYSJ


Chromosome: 8 ,  position: 25,507,889 - 25,509,727 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 caaaccctaa atccacgcgc attccacacc acccaaccag cgagagagag atggcggcgc 
000061 tccaccacca ggcggcggcg gcgccggtga cgacgacgac ggacgggggc gagctgcggg 
000121 cgatggacct gtacgagaag ctggagaagg tcggggaggg gacgtacggg aaggtgtaca 
000181 aggcgcggga gaaggcgacg gggcggatcg tggcgctgaa gaagacgcgg ctgccggagg 
000241 acgacgaggg cgtgccgccg acggcgctca gggaggtgtc gctgctgcgg atgctgtcgc 
000301 aggactcgca cgtggtgcgc ctgctggacc tcaagcaggg gcagaacaag gagggccaga 
000361 ccatcctcta cctcgtcttc gagtacatgg acaccgacct caagaagttc atccgcgccc 
000421 accgccagaa tctccagaag atccccgtgc ccaccgtcaa ggtatccatc cggctacgac 
000481 cgcttcagat ctggatcagg ggttcttctt cttgtttttt tttcccgtgc acgcggggtg 
000541 tttgtgtgaa tgcctcgtcc gtgtttgtct ggttcgatgg gggtgattga tgggggatgc 
000601 gcttgtgcag atcctgatgt accagctctg caagggcgtt gctttctgcc atggccgcgg 
000661 tgtgctgcac cgtgacctca agccgcataa cctgctcatg gaccgcaaga ccatggcgct 
000721 caagatcgcc gacctcgggc tcagccgctc gttcactgtc cctctcaaga agtacaccca 
000781 cgaggtccgg ttcctacatc ctactactag cagtctctaa tctgcttggt gatctgtttc 
000841 gcatgcgtga tttctgttct tggatctcac tgtgatgaat ggattatttt tcgcagatcc 
000901 tgacgctgtg gtacagggct cccgaggttc ttcttggcgc ggcacactac tccactccgg 
000961 ttgacatctg gtctgtgggc tgcatttttg gtacggtgaa ctgatatttt ggccactgta 
001021 aattatcatt tcttcaggat tcatgccttg acattgttga tatatcttgt gcattgcagc 
001081 tgagttggcc actaaccaac ctcttttcgc tggagattcc gaggttcagc agcttctgca 
001141 cattttcaag tactgtgcct gtttcctcat caattgttct ttgtgctcgc tggcatactt 
001201 gaggggtata atcgtgtatt catggtggtg atttatcttg attgtttggt tccaggttgc 
001261 tgggcacccc aaatgagcaa gtttggccag gagtgagcaa gctacctaac tggcacgagt 
001321 acccccagtg gaatccctcg aaagtgtctg atcttgtcca tggtctcgac gctgatgctc 
001381 ttgatcttct tgaggtttgt actatgctgc ttttgctcgt tgctatactt gattattttc 
001441 ttctacttca aaatcgatgt acaatgttag gtgtaaactg tatcatgaac gtaaaatgga 
001501 agaaaggtgt tatcaattga attgaatcct gacatggttc ttgttttcga ttgcagaaaa 
001561 tgctgcagta cgagccgtcg aagcggatct ctgcgaagaa ggccatggag catccctact 
001621 tcaacgacgt gaacaaggag ctctactgaa ggtcgattga tgatgttcac caccaaggaa 
001681 aaaaaaacgt tgtgcgtctt cgtgactagc ctgccctgaa gcattgcttt tgcttctagg 
001741 gggaaaagta ctgtttgtgt ctgtttcctg gatgctgctt agtgtgctta agaattcact 
001801 tgtttgtgat ggtaatgagt aatgacttaa gaattcgac

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ462834 bags24j18 683
more... (Total Hit Count: 10 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ685773 whpc2k03 855
more... (Total Hit Count: 27 )
/rice/oryzabase