Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK058948 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os08g0180100 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 8 |
| RAP - Location, Length | 4,693,944 - 4,695,565 ( + ) ; 1,622(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 4,693,944 - 4,693,966 ( + ) ; 23 (bp) |
| Exon 2 | Location | 4,694,092 - 4,694,339 ( + ) ; 248 (bp) |
| Exon 3 | Location | 4,694,434 - 4,694,542 ( + ) ; 109 (bp) |
| Exon 4 | Location | 4,694,631 - 4,694,930 ( + ) ; 300 (bp) |
| Exon 5 | Location | 4,695,146 - 4,695,565 ( + ) ; 420 (bp) |
| Related Rice IDs | ||||||||
|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | RAP Annotated Accession No |
KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
| Os08g0180100 | Os08t0180100-02 | 001020A05 | 100882 | 001020A05 | 7543 | LOC_Os08g08210.1 | AK058948 | 36147 |
Chromosome: 8 , position: 4,693,944 - 4,695,565 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 atttgactca tacacttgac aaggtgcgca ttttatgccc cctagcttga agttattcag 000061 tataagtgaa caaaaaacat gcactatgca ctaacaaccc aaaagaagtc tcttctgatg 000121 catttttatg gatcattgtt atgttcaggt aagatatgtc atgagatgca tatttgggga 000181 tcccaagaat gctcctcctc cactggtgag gctaactggg agaagtctag tttctgccat 000241 ctggaaaggg gaaggctcgt tagttgatga acttcttgag tcaatggaac ctcatgttga 000301 ggaagatgta cttactgacc tcaaagccaa aattcgtgct catgatccat ctggttccga 000361 ggacattgag ggagaaatcc gaagttctct tttatggtga gtttagaata tattcttgtt 000421 ttgtttgacc attaatctga ctcttccctc cagtcacctg tatctggaat ctgaccgccc 000481 ttttcttcag gttgcgtgat gagctgagaa ctctttcatg cacatacaag tgtcggcatg 000541 atgctgctgc tgatttgatt cacatgtatg cttacacaaa gtgttttttc agagtccgag 000601 taagtgaaaa cttcctctta attttgcaac aaatgtttgt gatttttctc tgtaccaaag 000661 gactgactca aggatcacca catgcaggat tacaagacgg taaaatctcc accggttctt 000721 atcagtcctc ttgatttagg tcccaaatat gcagataaac tgggaccagg cttccaggag 000781 tactgtaaga catacccaga aaattattgc ttaggtcaac tcatttattg gtatagccag 000841 aatgcggagc ctgaatctag attgacaaga gctagaaagg gttgtatgtc attgccagat 000901 gtatcctcct tctatgtgaa gtcagtaaaa ccaacacaag agcgagtcta tggcagcaga 000961 actgtgagat tcatgttagc gcgcatggta agtgcttacc ttttatatgt cattgtggct 001021 aaaatattcc aaattttgtt cttggaactc gttcagtgtg gaaaacaaaa gagaatattt 001081 gttctagaca atattaaatc atcttctgtt ggattgagta tttctcttca tatatgcaat 001141 atattacagt ttctttccct gactcccatc tttctcaatg aaactgcgtg gttttattac 001201 aggagaacca ggcacaaagg ccatggccca aggaccggat atgggttttc aagagtgacc 001261 caagattctt tggtactcca atgatggatg ccgtattgaa taattccccc cttgacaagg 001321 agatggtgca ttggctcaag acaagatcca acgtcttcct aggctagcca aggaattgta 001381 ggcagagggt attggttttt ttcctttgga gattttagtc agacaccatt cttttttctt 001441 cctactcaca cctttcctac ctaatcatgg ggatttagct tttagatggc agggtaacaa 001501 cagtctctct caccttcccc atttgtacag ccccctcctc cccttacctt gtagagatgt 001561 gttccattat taactgatag atccatcatt gatttaatgt agcgcctttt cccgttgcgt 001621 ag |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ898207 | whthkles15g24 | 700 |
| more... (Total Hit Count: 20 ) | ||
