cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK120959     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os07g0586900 ( IRGSP 1.0 )
RAP - Chromosome No. 7
RAP - Location, Length 24,528,966 -  24,531,244  ( + ) ;   2,279(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,528,966 -  24,531,244 ( + ) ;   2,279 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os07g0586900 Os07t0586900-01 J023039J21 215678 J023039J21 20889 LOC_Os07g39820.1 AK120959 28547 AP008213.2 255677434 BAF22047.1 113611669 NC_008400.2 297607852 NM_001066668.1 115473068 NP_001060133.1 115473069 Q8H2X8 SHR1_ORYSJ


Chromosome: 7 ,  position: 24,528,966 - 24,531,244 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tagatggata cgctgtttag gttggttagc ctccaagccg cctccgagca gcagcagcag 
000061 cagcagcagt cggcgtccta caactcgagg agcacgacgt cgagcgggtc caggtcgtcg 
000121 tcgcaccaga cgaacgcgtc ctacagctac taccaccaca gcagcaacag cggcggcggc 
000181 ggcggaggcg gcggagggta ctactacggc ggccagcagc cgccgccgtc gcagtactac 
000241 tacctggagc cgtaccaaga agaatgcggc aacgccccac accaccagct ttacatggat 
000301 gaagacttct cctcctcgtc gtcgtcgagg cacttccacc acggcgcgcg ggtgcagcag 
000361 cagcagccgc cggcgtcgtc cacgcccacg gggacggcgc cgacgccgcc gctgtcgacc 
000421 tcgtccaccg cggcgggcgc cgggcacggc ctgttcgagg cggcggacct gtcgttcccg 
000481 ccggacctca acctcgactt ctcgtccccg gcgtcgtcgt ccggcggcgg gacagcgtcg 
000541 tcgggcgcgg ttgggggcgg cggcggcggg aggtgggcta gccagctgct gctggagtgc 
000601 gcgcggtcgg tggccgcccg cgacagccag cgcgtgcagc agctcatgtg gatgctcaac 
000661 gagctcgcgt cgccgtacgg cgacgtggag cagaagctgg cttcctactt cttgcagggg 
000721 ctgttcgctc ggctcacggc gtccgggccg cgcacgctgc gcacgctcgc cgcggcgtcc 
000781 gaccggaaca cgtcgttcga ctcgacgcgg cgcacggcgc tgcggttcca ggagctcagc 
000841 ccctggtcct cgtttgggca cgtcgccgcc aatggcgcca tcctcgagtc cttcctggag 
000901 gtcgccgccg cggcgtcgtc ggagacgcag cggttccaca tcctcgacct gagcaacacg 
000961 ttctgcacgc agtggccgac gctgctggag gcgctggcca cgcggtccgc cgacgagacg 
001021 ccgcacctct cgatcaccac cgtggtgtcc gccgcgccgt ccgcgcccac ggcggcggtg 
001081 cagcgcgtca tgcgggagat cgggcagcgc atggagaagt tcgcgcggct catgggcgtg 
001141 cccttccgct tccgcgccgt gcaccactcc ggggacctcg cggagctcga cctcgacgcg 
001201 ctcgacctcc gcgagggcgg cgccaccacc gcgctcgccg tcaactgcgt caactcgctg 
001261 cgcggcgtgg ttcccggcag ggcccgccgg cgcgacgcgt tcgcggcgtc gctccgccgg 
001321 ctggacccgc gggtcgtcac cgtcgtcgag gaggaggcgg acctggtggc gtccgatccc 
001381 gacgcgtcgt cggcgacgga ggaaggcggc gacacggagg cggcgttcct caaggtgttc 
001441 ggcgagggct tgcgcttctt ctcggcgtac atggattcgc tcgaggagag cttccccaag 
001501 acgagcaacg agaggctggc attggagagg ggagcagggc gcgccatcgt cgacttggtc 
001561 tcgtgcccgg cgtcggagtc gatggagcgg cgggagacgg cggcgtcgtg ggcgcggcgc 
001621 atgcggtcgg ccgggttctc tccggtggca ttcagcgagg acgtcgccga cgacgtgcga 
001681 tcgctgctgc gccggtacag ggaagggtgg tcgatgcgcg aggccggcac ggacgactcg 
001741 gcggccggag ccggcgtctt cctcgcgtgg aaggagcagc ctctggtgtg ggcaagcgcg 
001801 tggcggccat gatcggatcg tcgtgatcga tggatcaaag ctcaccggtg agtggaacag 
001861 catggaagaa aagagctcca tagctaagca agcacgcatg catatccacc atgcatgggg 
001921 taagctagca agctctctcg tgtgtgtcac gatcgacatt aatggcggct cacacaaagg 
001981 catgtagggt tttgaaacag cgtaggaagc tacagaaatg gatcacgtac gtacgtacac 
002041 attgggttgc agcgatcgag gagggagatg atagttttag ttcctagatt tgcatccatt 
002101 tttattcatc gatcgccaac aagttcttgg cgagaagatg attttgattt gcttgcttcc 
002161 atcttcttgt ttatttttcc ccctttcgtt tgtgtttctt cttaatttgt aagggttaac 
002221 gacatttttc ttcactctgg agaaatttta cgtgcatggt ttttatcatg cgtacctgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs  
Acc. No. Clone Name Length
BE417369 MUG020.C08R990620 600 view details
/rice/oryzabase