Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK120896 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os07g0658400 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 7 |
| RAP - Location, Length | 28,390,051 - 28,398,370 ( - ); 8,320(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 28,390,051 - 28,390,125 ( - ); 75 (bp) |
| Exon 2 | Location | 28,390,467 - 28,390,624 ( - ); 158 (bp) |
| Exon 3 | Location | 28,391,409 - 28,391,624 ( - ); 216 (bp) |
| Exon 4 | Location | 28,391,709 - 28,391,819 ( - ); 111 (bp) |
| Exon 5 | Location | 28,392,050 - 28,392,209 ( - ); 160 (bp) |
| Exon 6 | Location | 28,393,101 - 28,393,246 ( - ); 146 (bp) |
| Exon 7 | Location | 28,393,340 - 28,393,432 ( - ); 93 (bp) |
| Exon 8 | Location | 28,394,347 - 28,394,443 ( - ); 97 (bp) |
| Exon 9 | Location | 28,394,961 - 28,395,031 ( - ); 71 (bp) |
| Exon 10 | Location | 28,395,144 - 28,395,242 ( - ); 99 (bp) |
| Exon 11 | Location | 28,395,774 - 28,395,905 ( - ); 132 (bp) |
| Exon 12 | Location | 28,396,024 - 28,396,466 ( - ); 443 (bp) |
| Exon 13 | Location | 28,396,989 - 28,397,301 ( - ); 313 (bp) |
| Exon 14 | Location | 28,398,038 - 28,398,370 ( - ); 333 (bp) |
| Related Rice IDs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | RAP Annotated Accession No |
KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os07g0658400 | Os07t0658400-01 | J023030A09 | 215615 | J023030A09 | 3405 | LOC_Os07g46460.1 | AK120896 | 15176 | Q69RJ0 | GLTB_ORYSJ |
Chromosome: 7 , position: 28,390,051 - 28,398,370 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 gtattgtttg ttcgttcgtt gttgggtggt ggtagacgag gggtggtggt gtggtctcgt 000061 gccggggacc ggatcggcgc gcccatggcc acgctcccac gtgcggcggc ggcggcggcg 000121 ccgtcgccag ccgcggcgct gctcccgctc ccgcgcgccg cgccgctgct ggcggggcgc 000181 gcggcggcgc gctccgcggc gcggaggctc agggcgaggg ggacaagggc gccgccgctc 000241 gcggccgcgc ggcgcgggtg gggaggcgtc tccccgcgcg cggtgctcga cctgccacga 000301 cgacgggagg ccgcggagaa gcccgcgcag aaggtatggg ccgctccgcc gatcaggcgc 000361 ttgtacagtg gtgcggatgg ttgggtgaga gatggcgctt ggatgggtcg gtgttttggg 000421 gttttgcatg tttggttgtg gtgattactg attagattgg tttatgaagc tatgagccca 000481 tacgtgtttt catggattca tccctagttt tgaggccatt ttggtttatt tttctctcta 000541 tacatgcttc tagtggattt gcggtcgccc cgaatacatt ggaaatcaga gtaagctgcg 000601 gtagaggtgg ttcatggaac tgatgattca gattatttaa cgcctcctga tcactgttat 000661 tggataggct tttgtcctga tgcaaaagct acttgcatgt gcaagctttt tttaatctct 000721 agttgatcct tgttcactgc aagttgtcgc tgttgcgctg ttccttttgt ggattttttt 000781 aaaacagtag ggtagtaagt gaacaaacta caacaaatgc aggtgcgata aacaattatt 000841 tggtaaggaa cggatacatg acagctgtgg tggtaggtac tgatcgcgat cgaattccag 000901 gagtaccaca ttgtgtaatg cattggtgaa aaaggctgta atgtactttc catggctctt 000961 ctggaatgtc ttgaatgcaa gattgtattc tgagtcgcaa ttatgatgct gtaaatcaag 001021 cagtgtgttt tgctcttgtt gatatcagta tttcctttct atttatcagg ctgcagattt 001081 gaatgaaatc ttatcagaac gtggtgcttg tggtgttgga tttgtcgcaa acttgaaaaa 001141 tgagccttca ttcaatattg tccgggatgc ccttgtggct cttggctgca tggagcaccg 001201 tggtgggtgt ggagcggaca atgactccgg tgacggttca ggactgatga gtggtatccc 001261 atgggacttg ttcaatgact gggccaacaa gcaagggctt gctcccctgg acagaacaaa 001321 tacaggtgtc ggaatggtct ttcttccaca agacgagaat tctatggaag aagccaaagc 001381 tggtagagtg tttcttatgc ttacctcaat tttctgccca cattaccgag catttcttgc 001441 tttcaaagtg caatatttcc tgtgttcgta tggatcataa catttatgtt cgcaatgcat 001501 atcttgttgc cacctgtttc ggtatgtttt atttgggagt tttcatgctg ccatacttca 001561 tatcccatga caccttgacc cttttctgac tcactattat cccttgcatg aaattttaga 001621 aagtaaatat catttatttg tatctacaac tataacctat aacaaatgca ttttcagttt 001681 cttgtgtgct aaaattttca tcccttcaaa gggacaatta ttttataaaa ctcacaatga 001741 catctgcttc acaagtgaaa atggatatgg tggttaagta ccatatcctg ttttctattt 001801 tttttttaaa aaaatacatt cttatggttg gtagccagca gttaccatgt tggtttcgta 001861 ccattgtcat gcatgatctg aatgtcacca tgttgccttt tcagttgttg ccaaggtatt 001921 cactgacgaa ggccttgagg ttcttggctg gagaactgtt ccttttaatg tatcagtggt 001981 aggtcgctat gcaaaagaaa ccatgcctaa tatacaacag atatttgtga aagttgcaaa 002041 agaagataat gctgatgaca tagagagaga gttgtacatc tgccggaagc tgatagagcg 002101 ggccacaaaa tctgctagtt gggcagatga actttatttc tgttctttgt caagcagaac 002161 tatagtctac aaggggatgc ttcgatctga gattcttggg caattctatt tggaccttca 002221 gaatgaactc tacaaatcac cttttgccat ataccatcga agatacagta ccaatacaag 002281 ccctagatgg cctcttgctc aacctatgag gttacttgga cacaatggag agattaatac 002341 aatacaggtt tgttcctgaa tctataattc ttctatttgt tcgctgtatc tgatgtttag 002401 caaaagtgtg ttattgaaga ttaaacatac ctcaagtgta ttcatagtct atcctttcct 002461 tgcaggggaa cttgaactgg atgcgatcaa gggaagccac actacaatct cctgtatggc 002521 gtgggcgtga gcatgaaata cgtccatttg gtgatcctaa agcatctgat tcagcaaacc 002581 ttgacagtac tgctgaagta agagactgca catggagcat ccattactta tgcttcttgt 002641 ccacacaatt aacataattt tgctttcttt tttgtaataa ttctagagcc agttttttgg 002701 ggcactcctt gaccgttcaa aattcctttg gtgaatttgc ttaacaacac ataatttgtc 002761 tagcagctgt aggatgttaa cattttgata acaattgaga agtaaaatac agaaatctga 002821 cgaaaaaggc cagttcaaag tttttgaaac aattgaaaga tgcacagcat gtacaaacat 002881 cctatgatac tttgaattaa tgcttttgag atgtggagaa tgaagttgta cttctaaatg 002941 ttataaagtt gcaagttact gctagttgct aagcaacatg atttttactc gatctatttc 003001 aatgtgcatt atcatttata tatattaatc tgaatgtgca tcacacaccc tgctctcttc 003061 ttcaatgcat taaaagttgt tgcaaaactg ctgttattat taaatcatca aattctttct 003121 tgcaccagtt actgctaaga agtggcagaa gtcctgctga agctatgatg attctcgttc 003181 ctgaggcata caagaaccat cctacattgt caataaaata tcctgaggta tggaatgcgt 003241 tagtatatat agaagccatg ggtatgcatc aaattcctca catattaact agtgcaagca 003301 gttctgttca agtgaatgtt ctcttcattt gtgcattagg taatcgactt ctatgactac 003361 tataaaggtc aaatggaggc ttgggatgga cctgctttgc tcttatttag gtaaaatcat 003421 ttttgtgtta atctgttagg tatttaattt attttctttt gctatgtcag ttcatgatgt 003481 gtaggcacag ttttcttgca cagtttggtc aaaggcatct catgcatcag cagatttgac 003541 ttccttctaa tttatatacc ttgattcaag aaataaggat gcaccaagta gctatttatt 003601 gtgaaagata aaatcataag agaaggctac atgctgtcat tagaagtatt ggcaaacgat 003661 atctaagtgt agctgtagaa acctattgaa gcatggtaca gcaataaaat tccatatagg 003721 agacaaaact gatatatgca aaataacaac atatattaaa ataataatga aatattgctg 003781 aactgaaata ttgctgaact agtccccatg atagaggatg ctttctgttt tcatgaataa 003841 gatattccaa tacttctcca atttagagca tcctgcaaca gaattgacac tgcttacaag 003901 ttcgatttgg tatattcttg cgtgcagtga tggaaggaca gtaggagcat gtcttgatcg 003961 aaatggtctc cgcccagcac gctattggag aacatctgat gattttgttt atgttgcatc 004021 tgaggtatgc ccttttgatg ttctggtaat tttattcttc tgtatagaat tgattgttcg 004081 gtgacaatgt tattagagag aaacattgat attctcatgt atagtgaaat ctccattttg 004141 aaattcttga attggagcat ttggtttatc tgccaataac ttattgcaga tatactgaca 004201 cccttctata ccaaaccgca gagttcagat atcattgagt aagtattgtg tccatttgct 004261 aaagtgtagg tctgacatct acaacaggtg attaggagaa aattacgaag ttagtgtttt 004321 cgttcctatt aggatgttat gttttatgcc catgcatgtg tggtatcatc ctataatgat 004381 accacatggc aattaagttg gcagagtaaa tgcacagtac ctcaattgta gtgaagtaaa 004441 tagcatttgc agggtacatg gatgccatgc tattcttcct ttcctctgtc ttaaagaagc 004501 ttccctcaca ccttccttat accggcagct ttttatatag tattgcatac accattgagc 004561 atttaattac ggcttactgg atgcataatt tgaagaattg gtttacgtag atgatcactg 004621 ctgctcttga tagacgagtt gcttcatgaa attgttaagt caacttatgc ttaagtttgc 004681 taagtccaaa tcatgttcga ctctttggat ggcaattcat actctattac cctatttttt 004741 actatctttt gagcagttga aatgcgatat attatattta aaatcatgac aataaaatat 004801 taaccttgtg ccaccatact gcaacacttg atggagttac tttggatcac tttcttaaat 004861 gccctgtggg agtccccaaa gttctatatt gtatggttct tactgatcac tagctttttt 004921 ttttatgaca atctacaggt tggtgttata ccaatggatg agtcaaaggt agtaatgaaa 004981 ggaagattgg gtcctggaat gatgataacg gttgacctac aaactggcca ggttagaata 005041 gaaatgaaat aaccattttc ctttcttgct ttgagtattc cagacaattc aaatatatgt 005101 gctaaacctc atgaatcatc ttaggtgctt gaaaacacag aagtgaagaa aagtgtggct 005161 tcagcgaacc cctatggatc ctggttgcag caaagtacac gttcaataaa gcctgtcaac 005221 ttccagtcat ctgttgctat ggacaatgaa acggtcttga gacaccagca gtaagaatcc 005281 ctcagacttt gttccatcga tcttgaacat ctgttctttc ttttccttca attgggaact 005341 cccctactgt tctcctaaac aatcatctct tttgttcttt tctccttgtg gaacctaagt 005401 atgtttgtgc ttgagatagc aagtctatgt gctgattgta catttgtacc tggtatttgt 005461 gttgaaaaat atttgtgtaa ctttacatat ataaattaaa ttccttgtat tgcaatgtag 005521 ttttactctt cctgatggac aaatgtagtc tacagctgat tatatcatta tctaacttaa 005581 ttgttccttt ccattatcta tgcccaatgc gatagagaaa tagaatgtag cgtctttagt 005641 ttttctattt tctagttgta catatcccaa taaaaaaaaa gaaaaactcc catttcaaaa 005701 taaaattgta tcagaatgcg ccagtaattt ttttaatgaa acaccagtaa acctaaacta 005761 accattaata caaagattat attggcaggc catccatttt ttgtagtgtt atatcttgtg 005821 aaatatcaca atagcaacta aatatggtga aggtgtaaat tgtgaaacat ctcaatttct 005881 gaatacacca gaagaagtaa gattcattca gatttcagag gatatgccca aaactttgct 005941 tttgatcttg gtaaaacgcc atgcctagaa atattctttt caaccaattt ggctgatttt 006001 ggtatgttct cgatgtgtac tactccgcac ttacctattt ttctgtagat cagagtatca 006061 ggcgttgctg cacagaaaat ttgatgagac ataaagctta tatatgctag atggtcattc 006121 aggcttgata tttaatttga gattactgtc tttgtcttca gggcctttgg atattcgagt 006181 gaagatgttc aaatggtaat tgaaacaatg gcttcacaag gcaaggaacc aacattttgt 006241 atgggtgacg acattccatt agctgtgttg tcacaaaagc cacacatgtt atttgattat 006301 ttcaaacagc gatttgcaca agtaagtaaa tccttgctga tattatgcca gacaacttgt 006361 taaacaccta aagtgctttt ctcattgttt aatagtgtgt atttctttgt gcaactggtg 006421 tttcaactgt tagtgatgca caacaatggc ctgttgtcca ttgatttttt tcctcattta 006481 caaaagtaat tatagcaaga tgaaatcctg ccttctgctg gacataataa tgcattttgt 006541 ccgatttgta ggttacaaat cctgctattg atcccctcag agaaggtttg gttatgtctc 006601 ttgaagtcaa tattggtaaa cggcgcaata tcttggaagt tggccctgaa aatgctgatc 006661 aggtagttct tttgaaggaa atagtttttt tttttttttt ttgaattcat ggggaatata 006721 aagacaccat cttgttgaat tttcaggtta ccctatcaag tcctgtgctt aatgaaggtg 006781 aactagaatc acttttgaat gactcaaaac tgaagcctaa agtactctcg acatacttcg 006841 acatccgtaa aggtctagat ggttcccttg ataaggctat taaggttctt tgtgatgaag 006901 ctgatgctgc tgtgcggaat ggttctcaac ttcttgtgct ttctgatcgt tctgaagcac 006961 tcgtgagtag cttctgagtt ctgacatttt aaaatcctac ttcctctgtt tcaggttata 007021 agactttcta gcattgccca cattcatata gatgttaatg aatctagtca aatatatatg 007081 tctagattca ttaacatctt tatgaatgtg ggcaatgcta gaaagtctta taacctgaaa 007141 cggaggtagt agcatttaac gtaaaagctg tgctattttc atagtcttgg atggctaaga 007201 catctttaca tttttatttc actcctttac ataaccaaca gattgagtgt gttttatttc 007261 tttattcaaa tgtttattac tccgtagtgg ataatattaa ccaattatcc ttatttgaac 007321 tctaataata attataatta ttataaacac ttacatccat ggtgcaatga tactctgacg 007381 aggccacata attggtacct cggtagtatc gattagttac attttatatg ttacctgccc 007441 agttatatgt ctgtcaggag cattacttac tatcacagtt tagatttata gaattttgta 007501 atgatgacta ctgcagtact gatgtatcca cagatgcaca taagtttgta gcatgaaagc 007561 ttcatgaccg aatgctaatc tacctagttt ttttttctct tccatgttta gatcaaaatg 007621 caaaggtttt tttattcaaa ttcggactat ttactagtac aatgagatat acagttgaga 007681 taggattgtg ctatttgctt tattcatgtt tcctagattg caatattaaa ttgcttaatg 007741 atgtaggaac caactcgccc tgccatcccg atacttctag ctgttggtgc catccaccag 007801 catttgattc aaaatggtct tcggatgtct gcttccattg ttgctgatac tgctcagtgt 007861 tttagcaccc atcagtttgc ttgcttgatc ggatatggtg ccaggtatga ctttattgtc 007921 aacatagatt tctttcaata tccaccagtt cattacttat atttgcttca ttttgcatcc 007981 gaatcctgct tagatgaatg catacactct gaattaacat atgaatggga ttggaattta 008041 gcattgtgct taacacaaga agccgtaata taacacaact aagatacaag agatccatta 008101 aactaggtgt gttcttcctt ttcactcaat tgattttgtg taggttgtag tcataggtgt 008161 gcacttcctc taggaaccag atagtcttaa cagtgctgca tctgctttta gatttacttg 008221 tattaattct tgttttgtgc attagtgcta tatgtccgta tctggcacta gaaacatgcc 008281 ggcaatggag gctgagcaac aaaactgtta atttgatgcg |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| BJ551573 | bah63a07 | 708 |
| more... (Total Hit Count: 7 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ724798 | whvh7c01 | 859 |
| more... (Total Hit Count: 6 ) | ||
